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(-) Description

Title :  STRUCTURE OF THE BACTERIOPHAGE T4 TAIL TERMINATOR PROTEIN, GP15 (C-TERMINAL TRUNCATION MUTANT 1-261).
 
Authors :  A. Fokine, Z. Zhang, S. Kanamaru, V. D. Bowman, A. Aksyuk, F. Arisaka, V. M. G. Rossmann
Date :  02 Nov 12  (Deposition) - 27 Feb 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Fokine, Z. Zhang, S. Kanamaru, V. D. Bowman, A. A. Aksyuk, F. Arisaka V. B. Rao, M. G. Rossmann
The Molecular Architecture Of The Bacteriophage T4 Neck.
J. Mol. Biol. V. 425 1731 2013
PubMed-ID: 23434847  |  Reference-DOI: 10.1016/J.JMB.2013.02.012

(-) Compounds

Molecule 1 - TAIL CONNECTOR PROTEIN GP15
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: 15
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: TAIL COMPLETION PROTEIN 15

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HUH)

(-) Sites  (0, 0)

(no "Site" information available for 4HUH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HUH)

(-) Cis Peptide Bonds  (23, 23)

Asymmetric/Biological Unit
No.Residues
1Leu A:72 -Pro A:73
2Tyr A:109 -Asn A:110
3Gln A:142 -Pro A:143
4Arg A:183 -Arg A:184
5Leu B:72 -Pro B:73
6Tyr B:109 -Asn B:110
7Gln B:142 -Pro B:143
8Arg B:183 -Arg B:184
9Leu C:72 -Pro C:73
10Tyr C:109 -Asn C:110
11Gln C:142 -Pro C:143
12Arg C:183 -Arg C:184
13Leu D:72 -Pro D:73
14Tyr D:109 -Asn D:110
15Gln D:142 -Pro D:143
16Arg D:183 -Arg D:184
17Tyr E:109 -Asn E:110
18Gln E:142 -Pro E:143
19Arg E:183 -Arg E:184
20Leu F:72 -Pro F:73
21Tyr F:109 -Asn F:110
22Gln F:142 -Pro F:143
23Arg F:183 -Arg F:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HUH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HUH)

(-) Exons   (0, 0)

(no "Exon" information available for 4HUH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh..hhhhhhh......eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh A   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    || 109       119       129       139       149       159       169       183       193       203       213       223       233 
                                                                                                               87|                                                                      178|                                                   
                                                                                                               105                                                                       183                                                   


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh......eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh B   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSVETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52     || 71        81     ||108       118       128       138       148       158       168       178|      192       202       212       222       232  
                                                                                  58|                 87|                                                                      178|                                                   
                                                                                   68                 105                                                                       183                                                   


Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh......eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh C   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSIETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52      ||71        81     ||108       118       128       138       148       158       168       178|      192       202       212       222       232  
                                                                                   59|                87|                                                                      178|                                                   
                                                                                    69                105                                                                       183                                                   


Chain D from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh......eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh D   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSVETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52     || 71        81     ||108       118       128       138       148       158       168       178|      192       202       212       222       232  
                                                                                  58|                 87|                                                                      178|                                                   
                                                                                   68                 105                                                                       183                                                   


Chain E from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh..........eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh E   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSIVAKVETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52      ||67        77        87|      114       124       134       144       154       164       174   ||  188       198       208       218       228      
                                                                                   59|                    87|                                                                      178|                                                   
                                                                                    65                    105                                                                       183                                                   


Chain F from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeee......eeee..eee.hhhhhhhhhhhhhh.......eeeeeeeeeee..........eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4huh F   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSIVETILPRINLHLVDFSYNAPVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52      ||70        80      |107       117       127       137       147       157       167       177||     191       201       211       221       231   
                                                                                   59|                 87|                                                                      178|                                                   
                                                                                    68                 105                                                                       183
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HUH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HUH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HUH)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Arg A:183 - Arg A:184   [ RasMol ]  
    Arg B:183 - Arg B:184   [ RasMol ]  
    Arg C:183 - Arg C:184   [ RasMol ]  
    Arg D:183 - Arg D:184   [ RasMol ]  
    Arg E:183 - Arg E:184   [ RasMol ]  
    Arg F:183 - Arg F:184   [ RasMol ]  
    Gln A:142 - Pro A:143   [ RasMol ]  
    Gln B:142 - Pro B:143   [ RasMol ]  
    Gln C:142 - Pro C:143   [ RasMol ]  
    Gln D:142 - Pro D:143   [ RasMol ]  
    Gln E:142 - Pro E:143   [ RasMol ]  
    Gln F:142 - Pro F:143   [ RasMol ]  
    Leu A:72 - Pro A:73   [ RasMol ]  
    Leu B:72 - Pro B:73   [ RasMol ]  
    Leu C:72 - Pro C:73   [ RasMol ]  
    Leu D:72 - Pro D:73   [ RasMol ]  
    Leu F:72 - Pro F:73   [ RasMol ]  
    Tyr A:109 - Asn A:110   [ RasMol ]  
    Tyr B:109 - Asn B:110   [ RasMol ]  
    Tyr C:109 - Asn C:110   [ RasMol ]  
    Tyr D:109 - Asn D:110   [ RasMol ]  
    Tyr E:109 - Asn E:110   [ RasMol ]  
    Tyr F:109 - Asn F:110   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COMPL_BPT4 | P11112: 3j2m 3j2n 4hud

(-) Related Entries Specified in the PDB File

4hud T4 GP15 (ANOTHER CRYSTAL FORM).