3HYR - JenaLib

Title :   STRUCTURAL INSIGHT INTO G PROTEIN COUPLING AND REGULATION OF FE2+ MEMBRANE TRANSPORT

Authors :   M. J. Maher, M. Jormakka

Date :   23 Jun 09 (Deposition) - 25 Aug 09 (Release) - 13 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: A,B,C  (1x)

Keywords :   Iron Transport, G Protein, Cell Inner Membrane, Cell Membrane, Gtp- Binding, Ion Transport, Iron, Membrane, Nucleotide-Binding, Transmembrane, Transport, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Guilfoyle, M. J. Maher, M. Rapp, R. Clarke, S. Harrop, M. Jormakka
Structural Basis Of Gdp Release And Gating In G Protein Coupled Fe2+ Transport.
Embo J. V. 28 2677 2009
PubMed-ID: 19629046 | Reference-DOI: 10.1038/EMBOJ.2009.208

Compounds

Molecule 1 - FERROUS IRON TRANSPORT PROTEIN B
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	N-TERMINAL DOMAIN
	Gene	:	FEOB, B3409, JW3372
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 12)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	3	A:3-169 B:3-169 C:3-169

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	1	A:3-169 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	1	- B:3-169 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	1	- - C:3-169

Biological Unit 4 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	3	A:3-169 B:3-169 C:3-169

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:253
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh..eeeee......eeeeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh....hhhhhhhhhh..eee..hhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: A:3-169 UniProt: 3-169                                                                                                                                    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyr A   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNmLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVmPSDIPLKQRRWLGLQmLEGDIYSRAYAGEASQHLDAALARLRNEmDDPALHIADARYQCIAAICDVVS 260
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191|      201      |211       221       231     | 241       251         
                                                                                         64     71                                               121-MSE                                                                192-MSE         208-MSE                      237-MSE

Chain B from PDB  Type:PROTEIN  Length:253
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhh..eeeee......eeeeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh....hhhhhhhhhh..eee..hhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: B:3-169 UniProt: 3-169                                                                                                                                    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyr B   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNmLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVmPSDIPLKQRRWLGLQmLEGDIYSRAYAGEASQHLDAALARLRNEmDDPALHIADARYQCIAAICDVVS 260
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191|      201      |211       221       231     | 241       251         
                                                                                         64     71                                               121-MSE                                                                192-MSE         208-MSE                      237-MSE

Chain C from PDB  Type:PROTEIN  Length:253
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhh..eeeee......eeeeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh....hhhhhhhhhh..eee..hhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: C:3-169 UniProt: 3-169                                                                                                                                    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyr C   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNmLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVmPSDIPLKQRRWLGLQmLEGDIYSRAYAGEASQHLDAALARLRNEmDDPALHIADARYQCIAAICDVVS 260
                                    11        21        31        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191|      201      |211       221       231     | 241       251         
                                                                                         64     71                                               121-MSE                                                                192-MSE         208-MSE                      237-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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