3HYT - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURAL BASIS OF GDP RELEASE AND GATING IN G PROTEIN COUPLED FE2+ TRANSPORT

Authors :   M. J. Maher, M. Jormakka

Date :   23 Jun 09 (Deposition) - 25 Aug 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.74

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Iron Transport, G Protein, Cell Inner Membrane, Cell Membrane, Gtp- Binding, Ion Transport, Iron, Membrane, Nucleotide-Binding, Transmembrane, Transport, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Guilfoyle, M. J. Maher, M. Rapp, R. Clarke, S. Harrop, M. Jormakka
Structural Basis Of Gdp Release And Gating In G Protein Coupled Fe(2+) Transport.
Embo J. 2009
PubMed-ID: 19629046 | Reference-DOI: 10.1038/EMBOJ.2009.208

Molecule 1 - FERROUS IRON TRANSPORT PROTEIN B
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	N-TERMINAL DOMAIN
	Gene	:	FEOB, B3409, JW3372
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	FEOB

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	AGO	3	Ligand/Ion	2-AMINO-9-(5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]OXY}PHOSPHORYL]-3-O-{[2-(METHYLAMINO)PHENYL]CARBONYL}-BETA-D-ERYTHRO-PENTOFURANOSYL-2-ULOSE)-1,9-DIHYDRO-6H-PURIN-6-ONE
2	MG	3	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:11 , PRO A:12 , ASN A:13 , SER A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , ASN A:120 , MET A:121 , ASP A:123 , ILE A:124 , VAL A:149 , SER A:150 , THR A:151 , HOH A:314 , MG A:802	BINDING SITE FOR RESIDUE AGO A 801
2	AC2	SOFTWARE	THR A:17 , HOH A:306 , HOH A:314 , AGO A:801	BINDING SITE FOR RESIDUE MG A 802
3	AC3	SOFTWARE	PRO B:12 , ASN B:13 , SER B:14 , GLY B:15 , LYS B:16 , THR B:17 , THR B:18 , GLY B:59 , ASN B:120 , MET B:121 , ASP B:123 , ILE B:124 , HOH B:291 , HOH B:307 , MG B:802	BINDING SITE FOR RESIDUE AGO B 801
4	AC4	SOFTWARE	THR B:17 , HOH B:307 , AGO B:801	BINDING SITE FOR RESIDUE MG B 802
5	AC5	SOFTWARE	ASN C:11 , PRO C:12 , ASN C:13 , SER C:14 , GLY C:15 , LYS C:16 , THR C:17 , THR C:18 , VAL C:30 , GLY C:59 , ASN C:120 , MET C:121 , ASP C:123 , ILE C:124 , SER C:150 , THR C:151 , MG C:802	BINDING SITE FOR RESIDUE AGO C 801
6	AC6	SOFTWARE	LYS C:16 , THR C:17 , AGO C:801	BINDING SITE FOR RESIDUE MG C 802

(no "SS Bond" information available for 3HYT)

(no "Cis Peptide Bond" information available for 3HYT)

(no "SAP(SNP)/Variant" information available for 3HYT)

Asymmetric/Biological Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	3	A:3-169 B:3-169 C:3-169

(no "Exon" information available for 3HYT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:260
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh..ee.---------.eeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhhh..eehhhhhhhhhh..eee.......hhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: A:3-169 UniProt: 3-169                                                                                                                                    -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt A   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
                                    11        21        |-        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
                                                       30        40                      64     71

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh..ee.---------.eeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh....hhhhhhhhhh..eee..hhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: B:3-169 UniProt: 3-169                                                                                                                                    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt B   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
                                    11        21        |-        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
                                                       30        40                      64     71

Chain C from PDB  Type:PROTEIN  Length:241
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:260
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh.....---------.eeeeee....eeeeee.......----------hhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhhh....hhhhhhhhhh..eee.......hhhhhhhhhhh............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: C:3-169 UniProt: 3-169                                                                                                                                    -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt C   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSL----------EQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
                                    11        21        |-        41        51        61 |       -  |     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
                                                       30        40                     63         74

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3HYT)

(no "CATH Domain" information available for 3HYT)

(no "Pfam Domain" information available for 3HYT)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (FEOB_ECOLI | P33650)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0015093	ferrous iron transmembrane transporter activity	Enables the transfer of ferrous iron (Fe(II) or Fe2+) ions from one side of a membrane to the other.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:1903874	ferrous iron transmembrane transport	The directed movement of ferrous iron (iron(2+)) across a membrane.
	GO:0015684	ferrous iron transport	The directed movement of ferrous iron (Fe(II) or Fe2+) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055072	iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 3hyt)

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	3hyt
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	FEOB_ECOLI \| P33650	:	3hyr 3i8s 3i8x 3i92 4q00 4q5i 4r98

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

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Gene Ontology (13, 13)

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