3HYT - JenaLib

Title :   STRUCTURAL BASIS OF GDP RELEASE AND GATING IN G PROTEIN COUPLED FE2+ TRANSPORT

Authors :   M. J. Maher, M. Jormakka

Date :   23 Jun 09 (Deposition) - 25 Aug 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.74

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Iron Transport, G Protein, Cell Inner Membrane, Cell Membrane, Gtp- Binding, Ion Transport, Iron, Membrane, Nucleotide-Binding, Transmembrane, Transport, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Guilfoyle, M. J. Maher, M. Rapp, R. Clarke, S. Harrop, M. Jormakka
Structural Basis Of Gdp Release And Gating In G Protein Coupled Fe(2+) Transport.
Embo J. 2009
PubMed-ID: 19629046 | Reference-DOI: 10.1038/EMBOJ.2009.208

Compounds

Molecule 1 - FERROUS IRON TRANSPORT PROTEIN B
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	N-TERMINAL DOMAIN
	Gene	:	FEOB, B3409, JW3372
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	FEOB

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	AGO	3	Ligand/Ion	2-AMINO-9-(5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]OXY}PHOSPHORYL]-3-O-{[2-(METHYLAMINO)PHENYL]CARBONYL}-BETA-D-ERYTHRO-PENTOFURANOSYL-2-ULOSE)-1,9-DIHYDRO-6H-PURIN-6-ONE
2	MG	3	Ligand/Ion	MAGNESIUM ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:11 , PRO A:12 , ASN A:13 , SER A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , ASN A:120 , MET A:121 , ASP A:123 , ILE A:124 , VAL A:149 , SER A:150 , THR A:151 , HOH A:314 , MG A:802	BINDING SITE FOR RESIDUE AGO A 801
2	AC2	SOFTWARE	THR A:17 , HOH A:306 , HOH A:314 , AGO A:801	BINDING SITE FOR RESIDUE MG A 802
3	AC3	SOFTWARE	PRO B:12 , ASN B:13 , SER B:14 , GLY B:15 , LYS B:16 , THR B:17 , THR B:18 , GLY B:59 , ASN B:120 , MET B:121 , ASP B:123 , ILE B:124 , HOH B:291 , HOH B:307 , MG B:802	BINDING SITE FOR RESIDUE AGO B 801
4	AC4	SOFTWARE	THR B:17 , HOH B:307 , AGO B:801	BINDING SITE FOR RESIDUE MG B 802
5	AC5	SOFTWARE	ASN C:11 , PRO C:12 , ASN C:13 , SER C:14 , GLY C:15 , LYS C:16 , THR C:17 , THR C:18 , VAL C:30 , GLY C:59 , ASN C:120 , MET C:121 , ASP C:123 , ILE C:124 , SER C:150 , THR C:151 , MG C:802	BINDING SITE FOR RESIDUE AGO C 801
6	AC6	SOFTWARE	LYS C:16 , THR C:17 , AGO C:801	BINDING SITE FOR RESIDUE MG C 802

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Asymmetric/Biological Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_FEOB	PS51711	FeoB-type guanine nucleotide-binding (G) domain profile.	FEOB_ECOLI	3-169	3	A:3-169 B:3-169 C:3-169

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:260
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh..ee.---------.eeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhhh..eehhhhhhhhhh..eee.......hhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: A:3-169 UniProt: 3-169                                                                                                                                    -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt A   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
                                    11        21        |-        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
                                                       30        40                      64     71

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh..ee.---------.eeeeee....eeeeee........------hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh....hhhhhhhhhh..eee..hhhhhhhhhhhhhhhh............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: B:3-169 UniProt: 3-169                                                                                                                                    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt B   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSLT------SLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVS 260
                                    11        21        |-        41        51        61  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
                                                       30        40                      64     71

Chain C from PDB  Type:PROTEIN  Length:241
 aligned with FEOB_ECOLI | P33650 from UniProtKB/Swiss-Prot  Length:773

    Alignment length:260
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
           FEOB_ECOLI     2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhh.....---------.eeeeee....eeeeee.......----------hhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhhh....hhhhhhhhhh..eee.......hhhhhhhhhhh............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -G_FEOB  PDB: C:3-169 UniProt: 3-169                                                                                                                                    -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyt C   2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV---------RKEGQFSTTDHQVTLVDLPGTYSL----------EQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSN 261
                                    11        21        |-        41        51        61 |       -  |     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
                                                       30        40                     63         74

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

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Gene Ontology (13, 13)

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	3hyt
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