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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CBC-IMPORTIN ALPHA COMPLEX.
 
Authors :  S. M. G. Dias, A. L. B. Ambrosio, R. A. Cerione
Date :  01 Dec 08  (Deposition) - 11 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cap Binding Complex, Importin Alpha, Nuclear Transport, Mrna Transport, Nucleus, Phosphoprotein, Rna-Binding, Host-Virus Interaction, Translation, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. M. Dias, K. F. Wilson, K. S. Rojas, A. L. Ambrosio, R. A. Cerione
The Molecular Basis For The Regulation Of The Cap-Binding Complex By The Importins.
Nat. Struct. Mol. Biol. V. 16 930 2009
PubMed-ID: 19668212  |  Reference-DOI: 10.1038/NSMB.1649

(-) Compounds

Molecule 1 - NUCLEAR CAP-BINDING PROTEIN SUBUNIT 1
    ChainsA
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPVL1393
    Expression System StrainSF21
    Expression System Taxid562
    Expression System Vector TypeBACULOVIRUS
    GeneCBP80, NCBP, NCBP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCAP BINDING PROTEIN 80;
80 KDA NUCLEAR CAP-BINDING PROTEIN
 
Molecule 2 - NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2
    ChainsB
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPVL1393
    Expression System StrainSF21
    Expression System Taxid562
    Expression System Vector TypeBACULOVIRUS
    GeneCBP20, NCBP2, PIG55
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCAP BINDING PROTEIN 20
 
Molecule 3 - IMPORTIN SUBUNIT ALPHA-2
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET 30
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneKPNA2, RCH1, SRP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIMPORTIN ALPHA 1

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3FEY)

(-) Sites  (0, 0)

(no "Site" information available for 3FEY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FEY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Lys A:221 -Pro A:222
2Leu A:362 -Pro A:363
3Ser C:219 -Ser C:220
4Asn C:241 -Pro C:242

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 5)

Asymmetric/Biological Unit (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_067625A157VIMA1_HUMANPolymorphism17850032CA157V
2UniProtVAR_013137P165RIMA1_HUMANPolymorphism11545989CP165R
3UniProtVAR_067626G365SIMA1_HUMANPolymorphism1059558CG365S
4UniProtVAR_014453T430PIMA1_HUMANPolymorphism1059538CT430P
5UniProtVAR_067627K453NIMA1_HUMANPolymorphism17850031CK453N

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 6)

Asymmetric/Biological Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.NCBP2_HUMAN40-118  1B:40-118
2ARM_REPEATPS50176 Armadillo/plakoglobin ARM repeat profile.IMA1_HUMAN162-190
119-162
293-335
251-293
335-377
  5C:162-190
C:119-162
C:293-335
C:251-293
C:335-377

(-) Exons   (34, 34)

Asymmetric/Biological Unit (34, 34)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003212561aENSE00001056985chr3:196669468-196669297172NCBP2_HUMAN1-26261B:12-154
1.3cENST000003212563cENSE00001786473chr3:196666303-196666122182NCBP2_HUMAN27-87611B:30-87 (gaps)58
1.3gENST000003212563gENSE00001618834chr3:196664519-196664381139NCBP2_HUMAN87-133471B:87-12640
1.3pENST000003212563pENSE00001929594chr3:196663953-1966622781676NCBP2_HUMAN134-156230--

2.1ENST000003304591ENSE00001673356chr17:66031848-66031956109IMA1_HUMAN-00--
2.2ENST000003304592ENSE00002150216chr17:66033226-6603332398IMA1_HUMAN1-25250--
2.3ENST000003304593ENSE00001697155chr17:66033474-66033611138IMA1_HUMAN26-71461C:69-713
2.4ENST000003304594ENSE00001771132chr17:66036794-6603688289IMA1_HUMAN72-101301C:72-10130
2.5ENST000003304595ENSE00001684697chr17:66038201-66038469269IMA1_HUMAN101-191911C:101-19191
2.6ENST000003304596ENSE00001643282chr17:66039021-6603911595IMA1_HUMAN191-222321C:191-222 (gaps)32
2.7ENST000003304597ENSE00001723038chr17:66039216-66039479264IMA1_HUMAN223-310881C:223-31088
2.8ENST000003304598ENSE00001716874chr17:66039954-66040187234IMA1_HUMAN311-388781C:311-38878
2.9ENST000003304599ENSE00001712528chr17:66040437-66040619183IMA1_HUMAN389-449611C:389-44961
2.10ENST0000033045910ENSE00001781256chr17:66041888-66042037150IMA1_HUMAN450-499501C:450-49950
2.11ENST0000033045911ENSE00001735149chr17:66042620-66042969350IMA1_HUMAN500-529300--

3.1aENST000003751471aENSE00002154723chr9:100395908-100396197290NCBP1_HUMAN1-12121A:2-1211
3.2ENST000003751472ENSE00001610908chr9:100403076-10040316489NCBP1_HUMAN12-41301A:12-4130
3.3ENST000003751473ENSE00001626181chr9:100403844-100403944101NCBP1_HUMAN42-75341A:42-7534
3.4ENST000003751474ENSE00001686031chr9:100405486-100405642157NCBP1_HUMAN75-127531A:75-12753
3.5ENST000003751475ENSE00001730187chr9:100407399-100407506108NCBP1_HUMAN128-163361A:128-16336
3.6ENST000003751476ENSE00001803534chr9:100407893-100408014122NCBP1_HUMAN164-204411A:164-20441
3.7ENST000003751477ENSE00001693192chr9:100409774-10040984370NCBP1_HUMAN204-227241A:204-22724
3.8ENST000003751478ENSE00001662271chr9:100410290-100410505216NCBP1_HUMAN228-299721A:228-29972
3.9bENST000003751479bENSE00001610051chr9:100412785-10041288298NCBP1_HUMAN300-332331A:300-33233
3.10ENST0000037514710ENSE00001738969chr9:100413592-10041365564NCBP1_HUMAN332-353221A:332-35322
3.11ENST0000037514711ENSE00001767060chr9:100416080-100416190111NCBP1_HUMAN354-390371A:354-39037
3.12ENST0000037514712ENSE00001626418chr9:100417162-10041722665NCBP1_HUMAN391-412221A:391-41222
3.13ENST0000037514713ENSE00001803324chr9:100417984-10041804663NCBP1_HUMAN412-433221A:412-43322
3.14ENST0000037514714ENSE00001648128chr9:100418293-10041836775NCBP1_HUMAN433-458261A:433-45826
3.15ENST0000037514715ENSE00001763342chr9:100420922-100421025104NCBP1_HUMAN458-493361A:458-49336
3.16ENST0000037514716ENSE00001592843chr9:100423228-100423350123NCBP1_HUMAN493-534421A:493-52533
3.17ENST0000037514717ENSE00001800577chr9:100424324-100424426103NCBP1_HUMAN534-568351A:539-56830
3.18ENST0000037514718ENSE00001802313chr9:100425236-10042532994NCBP1_HUMAN568-599321A:568-59932
3.19ENST0000037514719ENSE00001714911chr9:100426622-100426725104NCBP1_HUMAN600-634351A:600-63435
3.20bENST0000037514720bENSE00001728703chr9:100429045-100429159115NCBP1_HUMAN634-672391A:634-66734
3.21ENST0000037514721ENSE00000926499chr9:100431128-100431256129NCBP1_HUMAN673-715431A:683-71533
3.22aENST0000037514722aENSE00000926500chr9:100431875-100431988114NCBP1_HUMAN716-753381A:716-75338
3.23aENST0000037514723aENSE00001465914chr9:100433368-1004360302663NCBP1_HUMAN754-790371A:754-79037

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:761
 aligned with NCBP1_HUMAN | Q09161 from UniProtKB/Swiss-Prot  Length:790

    Alignment length:789
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781         
          NCBP1_HUMAN     2 SRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 790
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3feyA01 A:2-289  [code=1.25.40.180, no name defined]                                                                                                                                                                                                                                            3feyA02 A:290-481  [code=1.25.40.180, no name defined]                                                                                                                                          3feyA03 A:482-790  [code=1.25.40.180, no nam             e defined]                                                                                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...........hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.............................hhhhh..........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhh..hhhhhhhhhh...-------------.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.1a  -----------------------------Exon 3.3  PDB: A:42-75            ----------------------------------------------------Exon 3.5  PDB: A:128-163            Exon 3.6  PDB: A:164-204 UniProt: 164-204-----------------------Exon 3.8  PDB: A:228-299 UniProt: 228-299                               --------------------------------Exon 3.10             Exon 3.11  PDB: A:354-390            Exon 3.12             --------------------Exon 3.14  PDB: A:433-458 ----------------------------------Exon 3.16  PDB: A:493-525 UniProt: 493-534---------------------------------Exon 3.18  PDB: A:568-599       Exon 3.19  PDB: A:600-634          --------------------------------------Exon 3.21  PDB: A:683-715 UniProt: 673-715 Exon 3.22a  PDB: A:716-753            Exon 3.23a  PDB: A:754-790            Transcript 3 (1)
           Transcript 3 (2) ----------Exon 3.2  PDB: A:12-41        ---------------------------------Exon 3.4  PDB: A:75-127 UniProt: 75-127              ----------------------------------------------------------------------------Exon 3.7  PDB: A:204-227------------------------------------------------------------------------Exon 3.9b  PDB: A:300-332        -------------------------------------------------------------------------------Exon 3.13             ------------------------Exon 3.15  PDB: A:458-493           ----------------------------------------Exon 3.17  PDB: A:539-568          -----------------------------------------------------------------Exon 3.20b  PDB: A:634-667 [INCOMPLETE]---------------------------------------------------------------------------------------------------------------------- Transcript 3 (2)
                 3fey A   2 SRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVP-------------FNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLA---------------RKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 790
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521   |     -       541       551       561       571       581       591       601       611       621       631       641       651       661     |   -         - |     691       701       711       721       731       741       751       761       771       781         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     525           539                                                                                                                             667             683                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:97
 aligned with NCBP2_HUMAN | P52298 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:115
                                    21        31        41        51        61        71        81        91       101       111       121     
          NCBP2_HUMAN    12 DSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG 126
               SCOP domains d3fe              yb_ B: CBP20, 20KDa nuclear cap-binding prote    in                                               SCOP domains
               CATH domains 3fey              B00 B:12-126  [code=3.30.70.330, no name defi    ned]                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....--------------hhhhhhhhhh.eeeee......hhhhhhhhhhhhh.eeeeee...----.....eeeee.hhhhhhhhhhhh...ee..ee.eeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------RRM  PDB: B:40-118 UniProt: 40-118                                             -------- PROSITE
           Transcript 1 (1) Exon 1.1a      Exon 1.3c  PDB: B:30-87 (gaps) UniProt: 27-87 [INCOMPLETE]   --------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------Exon 1.3g  PDB: B:87-126 UniProt: 87-133 Transcript 1 (2)
                 3fey B  12 DSYV--------------EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD----TACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG 126
                               |     -        31        41        51        61        71  |    |81        91       101       111       121     
                              15             30                                          74   79                                               

Chain C from PDB  Type:PROTEIN  Length:428
 aligned with IMA1_HUMAN | P52292 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:431
                                    78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
           IMA1_HUMAN    69 NNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVE 499
               SCOP domains d3feyc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3feyC00 C:69-499 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhh...---...hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------V-------R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------P----------------------N---------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------ARM_REPEAT  PDB: C:162-190   ------------------------------------------------------------------------------------------------------ARM_REPEAT  PDB: C:293-335 UniProt: 293-335-------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------ARM_REPEAT  PDB: C:119-162 UniProt: 119-162 ----------------------------------------------------------------------------------------ARM_REPEAT  PDB: C:251-293 UniProt: 251-293-----------------------------------------ARM_REPEAT  PDB: C:335-377 UniProt: 335-377-------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 2 (1) 2.3Exon 2.4  PDB: C:72-101       -----------------------------------------------------------------------------------------Exon 2.6  PDB: C:191-222 (gaps) Exon 2.7  PDB: C:223-310 UniProt: 223-310                                               Exon 2.8  PDB: C:311-388 UniProt: 311-388                                     Exon 2.9  PDB: C:389-449 UniProt: 389-449                    Exon 2.10  PDB: C:450-499 UniProt: 450-499         Transcript 2 (1)
           Transcript 2 (2) --------------------------------Exon 2.5  PDB: C:101-191 UniProt: 101-191                                                  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 2 (2)
                 3fey C  69 MNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAV---SSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVE 499
                                    78        88        98       108       118       128       138       148       158       168       178       188       198       208      |  -|      228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
                                                                                                                                                                            215 219                                                                                                                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FEY)

(-) Gene Ontology  (59, 99)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NCBP1_HUMAN | Q09161)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000339    RNA cap binding    Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006370    7-methylguanosine mRNA capping    Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
    GO:0006405    RNA export from nucleus    The directed movement of RNA from the nucleus to the cytoplasm.
    GO:0016070    RNA metabolic process    The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
    GO:0008380    RNA splicing    The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
    GO:0008543    fibroblast growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.
    GO:0010467    gene expression    The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0031047    gene silencing by RNA    Any process in which RNA molecules inactivate expression of target genes.
    GO:0008334    histone mRNA metabolic process    The chemical reactions and pathways involving an mRNA encoding a histone.
    GO:0031124    mRNA 3'-end processing    Any process involved in forming the mature 3' end of an mRNA molecule.
    GO:0045292    mRNA cis splicing, via spliceosome    The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
    GO:0006406    mRNA export from nucleus    The directed movement of mRNA from the nucleus to the cytoplasm.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0000398    mRNA splicing, via spliceosome    The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
    GO:0051028    mRNA transport    The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051168    nuclear export    The directed movement of substances out of the nucleus.
    GO:0000184    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay    The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
    GO:0030307    positive regulation of cell growth    Any process that activates or increases the frequency, rate, extent or direction of cell growth.
    GO:0031442    positive regulation of mRNA 3'-end processing    Any process that activates or increases the frequency, rate or extent of mRNA 3'-end processing.
    GO:0098789    pre-mRNA cleavage required for polyadenylation    The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
    GO:1900363    regulation of mRNA polyadenylation    Any process that modulates the frequency, rate or extent of mRNA polyadenylation.
    GO:0006417    regulation of translation    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0006446    regulation of translational initiation    Any process that modulates the frequency, rate or extent of translational initiation.
    GO:0042795    snRNA transcription from RNA polymerase II promoter    The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter.
    GO:0006369    termination of RNA polymerase II transcription    The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
    GO:0006368    transcription elongation from RNA polymerase II promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0034518    RNA cap binding complex    Any protein complex that binds to a specialized RNA cap structure at any time in the lifetime of the RNA.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005845    mRNA cap binding complex    Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005846    nuclear cap binding complex    A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B   (NCBP2_HUMAN | P52298)
molecular function
    GO:0000340    RNA 7-methylguanosine cap binding    Interacting selectively and non-covalently with the 7-methylguanosine group added cotranscriptionally to the 5' end of RNA molecules transcribed by polymerase II.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000339    RNA cap binding    Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
    GO:0003729    mRNA binding    Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0017069    snRNA binding    Interacting selectively and non-covalently with a small nuclear RNA (snRNA).
biological process
    GO:0006370    7-methylguanosine mRNA capping    Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
    GO:0006405    RNA export from nucleus    The directed movement of RNA from the nucleus to the cytoplasm.
    GO:0008380    RNA splicing    The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
    GO:0008543    fibroblast growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.
    GO:0010467    gene expression    The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0031047    gene silencing by RNA    Any process in which RNA molecules inactivate expression of target genes.
    GO:0008334    histone mRNA metabolic process    The chemical reactions and pathways involving an mRNA encoding a histone.
    GO:0031124    mRNA 3'-end processing    Any process involved in forming the mature 3' end of an mRNA molecule.
    GO:0045292    mRNA cis splicing, via spliceosome    The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
    GO:0006406    mRNA export from nucleus    The directed movement of mRNA from the nucleus to the cytoplasm.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0000398    mRNA splicing, via spliceosome    The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
    GO:0051028    mRNA transport    The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051168    nuclear export    The directed movement of substances out of the nucleus.
    GO:0000184    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay    The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
    GO:0046833    positive regulation of RNA export from nucleus    Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
    GO:0031442    positive regulation of mRNA 3'-end processing    Any process that activates or increases the frequency, rate or extent of mRNA 3'-end processing.
    GO:0098789    pre-mRNA cleavage required for polyadenylation    The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
    GO:1900363    regulation of mRNA polyadenylation    Any process that modulates the frequency, rate or extent of mRNA polyadenylation.
    GO:0006417    regulation of translation    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0006446    regulation of translational initiation    Any process that modulates the frequency, rate or extent of translational initiation.
    GO:0006408    snRNA export from nucleus    The directed movement of snRNA from the nucleus to the cytoplasm.
    GO:0042795    snRNA transcription from RNA polymerase II promoter    The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter.
    GO:0006369    termination of RNA polymerase II transcription    The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
    GO:0006368    transcription elongation from RNA polymerase II promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005845    mRNA cap binding complex    Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA.
    GO:0005846    nuclear cap binding complex    A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C   (IMA1_HUMAN | P52292)
molecular function
    GO:0042826    histone deacetylase binding    Interacting selectively and non-covalently with the enzyme histone deacetylase.
    GO:0008139    nuclear localization sequence binding    Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008565    protein transporter activity    Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
    GO:0006259    DNA metabolic process    Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
    GO:0006607    NLS-bearing protein import into nucleus    The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0019054    modulation by virus of host process    The process in which a virus effects a change in the processes and activities of its host organism.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0000018    regulation of DNA recombination    Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IMA1_HUMAN | P522921efx 1qgk 1qgr 3fex 3wpt 4e4v 4wv6
        NCBP1_HUMAN | Q091611h2t 1h2u 1h2v 1h6k 1n52 1n54 3fex
        NCBP2_HUMAN | P522981h2t 1h2u 1h2v 1h6k 1n52 1n54 3fex

(-) Related Entries Specified in the PDB File

3fex LOWER RESOLUTION STRUCTURE