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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH HEXACHLOROPHENE
 
Authors :  M. Li, T. J. Smith
Date :  07 Oct 08  (Deposition) - 09 Jun 09  (Release) - 01 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Glutamate Dehydrogenase, Hexachlorophene, Inhibitor, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Li, C. J. Smith, M. T. Walker, T. J. Smith
Novel Inhibitors Complexed With Glutamate Dehydrogenase: Allosteric Regulation By Control Of Protein Dynamics
J. Biol. Chem. V. 284 22988 2009
PubMed-ID: 19531491  |  Reference-DOI: 10.1074/JBC.M109.020222
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTAMATE DEHYDROGENASE
    Chains: A, B, C, D, E, F
    EC Number: 1.4.1.3
    Fragment: GLUTAMATE DEHYDROGENASE SUBUNIT
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: LIVER

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric/Biological Unit (4, 24)
No.NameCountTypeFull Name
1GLU6Mod. Amino AcidGLUTAMIC ACID
2GTP6Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
3H3P6Ligand/Ion2,2'-METHANEDIYLBIS(3,4,6-TRICHLOROPHENOL)
4NDP6Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:94 , LYS A:134 , ASP A:168 , MET A:169 , SER A:170 , ARG A:211 , THR A:215 , PHE A:252 , GLY A:253 , ASN A:254 , VAL A:255 , GLU A:275 , SER A:276 , ALA A:326 , SER A:327 , GLN A:330 , ALA A:348 , ASN A:349 , ASN A:374 , GLU A:550BINDING SITE FOR RESIDUE NDP A 551
02AC2SOFTWAREILE A:212 , SER A:213 , ARG A:217 , LEU A:257 , HIS A:258 , ARG A:261 , TYR A:262 , GLU A:292 , LYS A:446 , HIS A:450BINDING SITE FOR RESIDUE GTP A 553
03AC3SOFTWAREARG B:94 , LYS B:134 , PRO B:167 , ASP B:168 , MET B:169 , SER B:170 , ARG B:211 , THR B:215 , GLN B:250 , PHE B:252 , GLY B:253 , ASN B:254 , VAL B:255 , GLU B:275 , SER B:276 , ALA B:326 , SER B:327 , GLN B:330 , GLY B:347 , ALA B:348 , ASN B:349 , ASN B:374 , GLU B:550BINDING SITE FOR RESIDUE NDP B 551
04AC4SOFTWAREHIS B:209 , ARG B:217 , HIS B:258 , ARG B:261 , TYR B:262 , ARG B:265 , GLU B:292 , HIS B:450 , HOH B:554BINDING SITE FOR RESIDUE GTP B 553
05AC5SOFTWAREARG C:94 , LYS C:134 , PRO C:167 , ASP C:168 , MET C:169 , SER C:170 , ARG C:211 , THR C:215 , PHE C:252 , GLY C:253 , ASN C:254 , VAL C:255 , GLU C:275 , SER C:276 , ALA C:325 , ALA C:326 , GLN C:330 , GLY C:347 , ASN C:349 , ASN C:374 , GLU C:550 , HOH C:582 , HOH C:590BINDING SITE FOR RESIDUE NDP C 551
06AC6SOFTWAREHIS C:209 , ARG C:217 , HIS C:258 , ARG C:261 , TYR C:262 , ARG C:265 , LYS C:289 , GLU C:292BINDING SITE FOR RESIDUE GTP C 553
07AC7SOFTWAREARG D:94 , LYS D:134 , ASP D:168 , MET D:169 , SER D:170 , ARG D:211 , THR D:215 , GLY D:251 , PHE D:252 , GLY D:253 , ASN D:254 , VAL D:255 , GLU D:275 , SER D:276 , ALA D:325 , ALA D:326 , SER D:327 , GLN D:330 , GLY D:347 , ALA D:348 , ASN D:349 , ASN D:374 , GLU D:550 , HOH D:560BINDING SITE FOR RESIDUE NDP D 551
08AC8SOFTWAREHIS D:209 , ARG D:217 , HIS D:258 , ARG D:261 , TYR D:262 , ARG D:265 , GLU D:292 , HIS D:450 , HOH D:554 , HOH D:567 , HOH D:573 , HOH D:586BINDING SITE FOR RESIDUE GTP D 553
09AC9SOFTWAREARG E:94 , LYS E:134 , ASP E:168 , MET E:169 , SER E:170 , ARG E:211 , THR E:215 , GLN E:250 , PHE E:252 , GLY E:253 , ASN E:254 , VAL E:255 , GLU E:275 , SER E:276 , ALA E:325 , ALA E:326 , SER E:327 , GLN E:330 , ALA E:348 , ASN E:349 , GLU E:550BINDING SITE FOR RESIDUE NDP E 551
10BC1SOFTWAREHIS E:209 , ARG E:217 , LEU E:257 , HIS E:258 , ARG E:261 , TYR E:262 , ARG E:265 , GLU E:292 , HIS E:450 , HOH E:572BINDING SITE FOR RESIDUE GTP E 553
11BC2SOFTWAREARG F:94 , LYS F:134 , ASP F:168 , MET F:169 , ARG F:211 , THR F:215 , PHE F:252 , GLY F:253 , ASN F:254 , VAL F:255 , GLU F:275 , SER F:276 , ALA F:326 , SER F:327 , GLN F:330 , GLY F:347 , ALA F:348 , ASN F:349 , ASN F:374BINDING SITE FOR RESIDUE NDP F 551
12BC3SOFTWAREHIS F:209 , ARG F:217 , HIS F:258 , ARG F:261 , TYR F:262 , ARG F:265 , GLU F:292 , HIS F:450BINDING SITE FOR RESIDUE GTP F 553
13BC4SOFTWARETYR A:190 , H3P A:552 , ALA B:153 , ILE B:158 , TYR B:183 , LYS E:154BINDING SITE FOR RESIDUE H3P B 552
14BC5SOFTWARETHR A:186 , ILE A:187 , TYR A:190 , HOH A:560 , H3P B:552 , MET E:150 , THR E:186 , ILE E:187 , HIS E:189BINDING SITE FOR RESIDUE H3P A 552
15BC6SOFTWAREALA A:153 , ALA D:153 , LYS D:154 , TYR E:190 , H3P F:552BINDING SITE FOR RESIDUE H3P D 552
16BC7SOFTWAREMET D:150 , THR D:186 , ILE D:187 , HIS D:189 , H3P D:552 , LYS F:154 , THR F:186 , ILE F:187 , TYR F:190BINDING SITE FOR RESIDUE H3P F 552
17BC8SOFTWAREALA C:153 , LYS C:154 , H3P C:554 , TYR D:190 , ALA F:153 , LYS F:154 , HOH F:572BINDING SITE FOR RESIDUE H3P C 552
18BC9SOFTWARETHR B:186 , ILE B:187 , TYR B:190 , MET C:150 , THR C:186 , ILE C:187 , HIS C:189 , H3P C:552 , HOH C:574BINDING SITE FOR RESIDUE H3P C 554

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ETE)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Thr A:87 -Pro A:88
2Thr B:87 -Pro B:88
3Thr C:87 -Pro C:88
4Thr D:87 -Pro D:88
5Thr E:87 -Pro E:88
6Thr F:87 -Pro F:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ETE)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLFV_DEHYDROGENASEPS00074 Glu / Leu / Phe / Val dehydrogenases active site.DHE3_BOVIN177-190
 
 
 
 
 		  6A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133

(-) Exons   (0, 0)

(no "Exon" information available for 3ETE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3etea1 A:4-208 automated matches                                                                                                                                                                            d3etea2 A:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteA01 A:4-56  [code=1.10.287.140, no name defined] 3eteA02 A:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteA03 A:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........eeeee..hhhhhhhhhhhhhh..eeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete A   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550


Chain B from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3eteb1 B:4-208 automated matches                                                                                                                                                                            d3eteb2 B:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteB01 B:4-56  [code=1.10.287.140, no name defined] 3eteB02 B:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteB03 B:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh........eeeeee..hhhhhhhhhhhhhh.eeeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete B   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550


Chain C from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3etec1 C:4-208 automated matches                                                                                                                                                                            d3etec2 C:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteC01 C:4-56  [code=1.10.287.140, no name defined] 3eteC02 C:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteC03 C:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........eeeee..hhhhhhhhhhhhhh..eeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete C   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550


Chain D from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3eted1 D:4-208 automated matches                                                                                                                                                                            d3eted2 D:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteD01 D:4-56  [code=1.10.287.140, no name defined] 3eteD02 D:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteD03 D:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........eeeee..hhhhhhhhhhhhhh..eeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete D   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550


Chain E from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3etee1 E:4-208 automated matches                                                                                                                                                                            d3etee2 E:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteE01 E:4-56  [code=1.10.287.140, no name defined] 3eteE02 E:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteE03 E:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh........eeeeee..hhhhhhhhhhhhhh.eeeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete E   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550


Chain F from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:497
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       
           DHE3_BOVIN    61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
               SCOP domains d3etef1 F:4-208 automated matches                                                                                                                                                                            d3etef2 F:209-498 automated matches                                                                                                                                                                                                                                                               -- SCOP domains
               CATH domains 3eteF01 F:4-56  [code=1.10.287.140, no name defined] 3eteF02 F:57-205 Leucine Dehydrogenase, chain A, domain 1                                                                                            3eteF03 F:206-498 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eee....hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh........ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhh..hhhhhhh........eeeeee..hhhhhhhhhhhhhh.eeeeeee....eeeeeeeehhhhhhhhhhhhh.....................eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...-. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ete F   4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV-E 550
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493    | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        498 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          550
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 18)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ETE)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DHE3_BOVIN | P00366)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0004352    glutamate dehydrogenase (NAD+) activity    Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+.
    GO:0004353    glutamate dehydrogenase [NAD(P)+] activity    Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006538    glutamate catabolic process    The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid.
    GO:0006541    glutamine metabolic process    The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0072350    tricarboxylic acid metabolic process    The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing three carboxyl (COOH) groups or anions (COO-).
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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  3ete
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHE3_BOVIN | P00366: 1hwy 1hwz 1nqt 1nr7 3etd 3etg 3jcz 3jd0 3jd1 3jd2 3jd3 3jd4 3mvo 3mvq 3mw9 3qmu 5k12

(-) Related Entries Specified in the PDB File

3etd 3etg