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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1 IN COMPLEX WITH RIBULOSE-1,5-BISPHOSPHATE
 
Authors :  A. Nakamura, M. Fujihashi, Y. Nishiba, S. Yoshida, A. Yano, H. Atomi, T. K. Miki
Date :  22 Oct 09  (Deposition) - 03 Nov 10  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Isomerase, Hexamer, Rossmann Fold, Complex, Amp Metabolism, Initiation Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, M. Fujihashi, R. Aono, T. Sato, Y. Nishiba, S. Yoshida, A. Yano, H. Atomi, T. Imanaka, K. Miki
Dynamic, Ligand-Dependent Conformational Change Triggers Reaction Of Ribose-1, 5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1
J. Biol. Chem. V. 287 20784 2012
PubMed-ID: 22511789  |  Reference-DOI: 10.1074/JBC.M112.349423

(-) Compounds

Molecule 1 - TRANSLATION INITIATION FACTOR EIF-2B, DELTA SUBUNIT
    Chains: A, B, C, D, E, F
    EC Number: 5.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD I
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: E2B2
    Organism Common: THERMOCOCCUS KODAKARAENSIS
    Organism Scientific: THERMOCOCCUS KODAKARENSIS
    Organism Taxid: 311400
    Strain: KOD1
    Synonym: RIBOSE-1,5-BISPHOSPHATE ISOMERASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1CSD6Mod. Amino Acid3-SULFINOALANINE
2MG2Ligand/IonMAGNESIUM ION
3PEG6Ligand/IonDI(HYDROXYETHYL)ETHER
4RUB6Ligand/IonRIBULOSE-1,5-DIPHOSPHATE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECSD A:133 , SER A:135 , LYS A:136 , ALA A:137 , ALA A:201 , ASN A:212 , LYS A:213 , LYS A:238 , ARG A:254 , HOH A:601 , HOH A:614BINDING SITE FOR RESIDUE RUB A 401
02AC2SOFTWARELYS A:224 , VAL A:228 , GLU A:285 , ASP A:288BINDING SITE FOR RESIDUE PEG A 402
03AC3SOFTWAREASP A:304 , ASP E:304BINDING SITE FOR RESIDUE MG A 411
04AC4SOFTWARECSD B:133 , SER B:135 , LYS B:136 , ALA B:137 , ALA B:201 , ASP B:202 , ASN B:212 , LYS B:213 , LYS B:238 , ARG B:254 , HOH B:601 , HOH B:603 , HOH B:615BINDING SITE FOR RESIDUE RUB B 401
05AC5SOFTWAREALA B:223 , LYS B:224 , ARG B:227 , VAL B:228 , THR B:230 , TYR B:286 , ASP B:288BINDING SITE FOR RESIDUE PEG B 402
06AC6SOFTWAREASP B:304 , ASP D:304BINDING SITE FOR RESIDUE MG B 411
07AC7SOFTWARECSD C:133 , SER C:135 , LYS C:136 , ALA C:137 , GLN C:164 , ALA C:201 , ASN C:212 , LYS C:213 , LYS C:238 , ARG C:254 , HOH C:601 , HOH C:609BINDING SITE FOR RESIDUE RUB C 401
08AC8SOFTWARELYS C:224 , VAL C:228 , GLU C:285 , TYR C:286 , ASP C:288BINDING SITE FOR RESIDUE PEG C 402
09AC9SOFTWARECSD D:133 , SER D:135 , LYS D:136 , ALA D:137 , GLN D:164 , ALA D:201 , ASN D:212 , LYS D:213 , LYS D:238 , ARG D:254 , HOH D:601 , HOH D:620 , HOH D:627BINDING SITE FOR RESIDUE RUB D 401
10BC1SOFTWARELYS D:224 , ARG D:227 , VAL D:228 , TYR D:286 , ASP D:288 , HOH D:619BINDING SITE FOR RESIDUE PEG D 402
11BC2SOFTWARECSD E:133 , SER E:135 , LYS E:136 , ALA E:137 , GLN E:164 , ALA E:201 , ASN E:212 , LYS E:213 , LYS E:238 , ARG E:254 , HOH E:601 , HOH E:618BINDING SITE FOR RESIDUE RUB E 401
12BC3SOFTWARELYS E:224 , ARG E:227 , VAL E:228 , TRP E:229 , ASP E:288BINDING SITE FOR RESIDUE PEG E 402
13BC4SOFTWARECSD F:133 , SER F:135 , LYS F:136 , ALA F:137 , LYS F:162 , ASN F:212 , LYS F:213 , LYS F:238 , ARG F:254 , HOH F:601 , HOH F:633BINDING SITE FOR RESIDUE RUB F 401
14BC5SOFTWARELYS F:224 , ARG F:227 , VAL F:228 , THR F:230 , ASP F:288 , HOH F:637BINDING SITE FOR RESIDUE PEG F 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A9C)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Arg A:160 -Pro A:161
2Arg B:160 -Pro B:161
3Arg C:160 -Pro C:161
4Arg D:160 -Pro D:161
5Arg E:160 -Pro E:161
6Arg F:160 -Pro F:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A9C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A9C)

(-) Exons   (0, 0)

(no "Exon" information available for 3A9C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:320
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322
          R15PI_THEKO     3 VVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhh...eeeehhhhhhhhhh...eeee...ee.....eeee.hhhhhhhhhhhhh.eeeee.hhhhh...............hhhhh.hhhhhh.....eee....eeeehhhhh.eeee..eeehhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c A   3 VVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    12        22        32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322
                                                                                                                                                            133-CSD                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:325
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:328
                                  1                                                                                                                                                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
          R15PI_THEKO     - ------MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh...eeeehhhhh..hhhhh.eeee...ee.....eeee.hhhhhhhhhhhhh.eeeee.hhhhh......---......hhhhh.hhhhhh.....eee....eeeehhhhh.eeee..eeehhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c B  -5 HIEGRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETML---VEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244|   |  254       264       274       284       294       304       314        
                                                                                                                                                                    133-CSD                                                                                                         245 249                                                                         


Chain C from PDB  Type:PROTEIN  Length:321
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
          R15PI_THEKO     2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhh...eeeehhhhh..hhhhh.eeee...eee....eeee.hhhhhhhhhhhh..eeeee.hhh.ee..............hhhhh.hhhhhh.....eee....eeeehhhhh.eeee..eeehhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c C   2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 |     141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
                                                                                                                                                             133-CSD                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:322
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
          R15PI_THEKO     1 MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeehhhhhhhhhh...eeee...ee.....eeee.hhhhhhhhhhhh..eeeee.hhhhh...............hhhhh.hhhhhh.....eee....eeeehhhhh.eee....eehhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c D   1 MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
                                                                                                                                                              133-CSD                                                                                                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:321
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
          R15PI_THEKO     2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeehhhhhhhhhh...eeee...ee.....eeee.hhhhhhhhhhhh..eeeee.hhhhh...............hhhhh.hhhhhh.....eee....eeeehhhhh.eeee..eeehhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c E   2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 |     141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
                                                                                                                                                             133-CSD                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:322
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
          R15PI_THEKO     1 MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhh...eeeehhhhhhhhhh...eeeee..ee.....eeee.hhhhhhhhhhhh...eeee.hhhhh...............hhhhh.hhhhhh.....eee....eeeehhhhh.eee....eehhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a9c F   1 MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHcHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  |    140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  
                                                                                                                                                              133-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3A9C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3A9C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A9C)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (R15PI_THEKO | Q5JFM9)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0044249    cellular biosynthetic process    The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
    GO:0044237    cellular metabolic process    The chemical reactions and pathways by which individual cells transform chemical substances.

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(-) Related Entries Specified in the PDB File

3a11 UNLIGANDED FORM OF THE SAME PROTEIN.