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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1 IN COMPLEX WITH RIBULOSE-1, BISPHOSPHATE
Keywords ISOMERASE, HEXAMER, ROSSMANN FOLD, COMPLEX, AMP METABOLISM, INITIATION FACTOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3A9C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 320 2541 8
2  Protein    B 325 2585 8
3  Protein    C 321 2546 8
4  Protein    D 322 2551 8
5  Protein    E 321 2546 8
6  Protein    F 322 2551 8
7  Ligand    A 3 0 26
8  Ligand    B 3 0 26
9  Ligand    C 2 0 25
10  Ligand    D 2 0 25
11  Ligand    E 2 0 25
12  Ligand    F 2 0 25
13 Water     268 0 268
total       2213 15320 468
Proteins
Unit 1 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 GLY246 GLN247 LEU248 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Unit 2 HIS-5 ILE-4 GLU-3 GLY-2 ARG-1 HIS0 MET1 ALA2 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Unit 3 ALA2 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 GLY246 GLN247 LEU248 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Unit 4 MET1 ALA2 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 GLY246 GLN247 LEU248 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Unit 5 ALA2 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 GLY246 GLN247 LEU248 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Unit 6 MET1 ALA2 VAL3 VAL4 LYS5 GLU6 VAL7 LEU8 GLU9 ILE10 ALA11 GLU12 LYS13 ILE14 LYS15 ASN16 MET17 GLU18 ILE19 ARG20 GLY21 ALA22 GLY23 LYS24 ILE25 ALA26 ARG27 SER28 ALA29 ALA30 TYR31 ALA32 LEU33 GLN34 LEU35 GLN36 ALA37 GLU38 LYS39 SER40 LYS41 ALA42 THR43 ASN44 VAL45 ASP46 GLU47 PHE48 TRP49 LYS50 GLU51 MET52 LYS53 GLN54 ALA55 ALA56 LYS57 ILE58 LEU59 PHE60 GLU61 THR62 ARG63 PRO64 THR65 ALA66 VAL67 SER68 LEU69 PRO70 ASN71 ALA72 LEU73 ARG74 TYR75 VAL76 MET77 HIS78 ARG79 GLY80 LYS81 ILE82 ALA83 TYR84 SER85 SER86 GLY87 ALA88 ASP89 LEU90 GLU91 GLN92 LEU93 ARG94 PHE95 VAL96 ILE97 ILE98 ASN99 ALA100 ALA101 LYS102 GLU103 PHE104 ILE105 HIS106 ASN107 SER108 GLU109 LYS110 ALA111 LEU112 GLU113 ARG114 ILE115 GLY116 GLU117 PHE118 GLY119 ALA120 LYS121 ARG122 ILE123 GLU124 ASP125 GLY126 ASP127 VAL128 ILE129 MET130 THR131 HIS132 CYS133 HIS134 SER135 LYS136 ALA137 ALA138 ILE139 SER140 VAL141 MET142 LYS143 THR144 ALA145 TRP146 GLU147 GLN148 GLY149 LYS150 ASP151 ILE152 LYS153 VAL154 ILE155 VAL156 THR157 GLU158 THR159 ARG160 PRO161 LYS162 TRP163 GLN164 GLY165 LYS166 ILE167 THR168 ALA169 LYS170 GLU171 LEU172 ALA173 SER174 TYR175 GLY176 ILE177 PRO178 VAL179 ILE180 TYR181 VAL182 VAL183 ASP184 SER185 ALA186 ALA187 ARG188 HIS189 TYR190 MET191 LYS192 MET193 THR194 ASP195 LYS196 VAL197 VAL198 MET199 GLY200 ALA201 ASP202 SER203 ILE204 THR205 VAL206 ASN207 GLY208 ALA209 VAL210 ILE211 ASN212 LYS213 ILE214 GLY215 THR216 ALA217 LEU218 ILE219 ALA220 LEU221 THR222 ALA223 LYS224 GLU225 HIS226 ARG227 VAL228 TRP229 THR230 MET231 ILE232 ALA233 ALA234 GLU235 THR236 TYR237 LYS238 PHE239 HIS240 PRO241 GLU242 THR243 MET244 LEU245 GLY246 GLN247 LEU248 VAL249 GLU250 ILE251 GLU252 MET253 ARG254 ASP255 PRO256 THR257 GLU258 VAL259 ILE260 PRO261 GLU262 ASP263 GLU264 LEU265 LYS266 THR267 TRP268 PRO269 LYS270 ASN271 ILE272 GLU273 VAL274 TRP275 ASN276 PRO277 ALA278 PHE279 ASP280 VAL281 THR282 PRO283 PRO284 GLU285 TYR286 VAL287 ASP288 VAL289 ILE290 ILE291 THR292 GLU293 ARG294 GLY295 ILE296 ILE297 PRO298 PRO299 TYR300 ALA301 ALA302 ILE303 ASP304 ILE305 LEU306 ARG307 GLU308 GLU309 PHE310 GLY311 TRP312 ALA313 LEU314 LYS315 TYR316 THR317 GLU318 PRO319 TRP320 GLU321 ASP322
Ligands
Unit 7 RUB401 PEG402 MG411
Unit 8 RUB401 PEG402 MG411
Unit 9 RUB401 PEG402
Unit 10 RUB401 PEG402
Unit 11 RUB401 PEG402
Unit 12 RUB401 PEG402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany