Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARENSIS KOD1 IN COMPLEX WITH ALPHA-D-RIBOSE-1,5-BISPHOSPHATE
 
Authors :  A. Nakamura, M. Fujihashi, R. Aono, T. Sato, Y. Nishiba, S. Yoshida, A. Y H. Atomi, T. Imanaka, K. Miki
Date :  08 Dec 11  (Deposition) - 25 Apr 12  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Rossmann Fold, Hexamer, Isomerase, Amp Metabolism, Sugar Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, M. Fujihashi, R. Aono, T. Sato, Y. Nishiba, S. Yoshida, A. Yano, H. Atomi, T. Imanaka, K. Miki
Dynamic, Ligand-Dependent Conformational Change Triggers Reaction Of Ribose-1, 5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1
J. Biol. Chem. V. 287 20784 2012
PubMed-ID: 22511789  |  Reference-DOI: 10.1074/JBC.M112.349423

(-) Compounds

Molecule 1 - TRANSLATION INITIATION FACTOR EIF-2B, DELTA SUBUNIT
    Chains: A, B, C
    EC Number: 5.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD I
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: E2B2, TK0185
    Mutation: YES
    Organism Scientific: THERMOCOCCUS KODAKARENSIS
    Organism Taxid: 69014
    Strain: KOD1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 19)

Asymmetric Unit (5, 19)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MG2Ligand/IonMAGNESIUM ION
3PEG10Ligand/IonDI(HYDROXYETHYL)ETHER
4PG41Ligand/IonTETRAETHYLENE GLYCOL
5RI23Ligand/Ion1,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
3PEG20Ligand/IonDI(HYDROXYETHYL)ETHER
4PG42Ligand/IonTETRAETHYLENE GLYCOL
5RI26Ligand/Ion1,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:17 , ARG A:20 , GLY A:21 , ALA A:22 , GLY A:23 , ILE A:25 , ARG A:63 , SER A:133 , HIS A:134 , SER A:135 , LYS A:136 , ALA A:137 , GLN A:164 , ALA A:201 , ASP A:202 , ASN A:212 , LYS A:213 , LYS A:238 , PHE A:279 , HOH A:501 , HOH A:505 , HOH A:520 , HOH A:621BINDING SITE FOR RESIDUE RI2 A 401
02AC2SOFTWARELYS A:224 , ARG A:227 , VAL A:228 , TRP A:229 , ASP A:288BINDING SITE FOR RESIDUE PEG A 402
03AC3SOFTWAREVAL A:128 , ASP A:151 , LYS A:153 , MET A:193BINDING SITE FOR RESIDUE PEG A 403
04AC4SOFTWARETRP A:146 , GLY A:149BINDING SITE FOR RESIDUE PEG A 404
05AC5SOFTWARELYS A:162 , LYS A:213 , HOH A:615 , HOH A:616BINDING SITE FOR RESIDUE CL A 411
06AC6SOFTWAREASP A:304 , ASP B:304 , ASP C:304BINDING SITE FOR RESIDUE MG A 323
07AC7SOFTWAREMET B:17 , ARG B:20 , GLY B:21 , ALA B:22 , GLY B:23 , ARG B:63 , SER B:133 , HIS B:134 , SER B:135 , LYS B:136 , ALA B:137 , GLN B:164 , ALA B:201 , ASP B:202 , ASN B:212 , LYS B:213 , LYS B:238 , PHE B:279 , HOH B:501 , HOH B:601BINDING SITE FOR RESIDUE RI2 B 401
08AC8SOFTWAREARG A:188 , LYS A:192 , LYS B:224 , ARG B:227 , VAL B:228 , TRP B:229 , ASP B:288BINDING SITE FOR RESIDUE PEG B 402
09AC9SOFTWAREVAL B:128 , LYS B:153 , PRO B:178 , ASN C:271 , GLU C:273 , TRP C:275BINDING SITE FOR RESIDUE PG4 B 403
10BC1SOFTWARETRP B:146 , GLY B:149BINDING SITE FOR RESIDUE PEG B 404
11BC2SOFTWARELYS A:192 , THR A:194 , LYS B:192 , THR B:194 , HIS B:226BINDING SITE FOR RESIDUE PEG B 405
12BC3SOFTWAREGLU B:18 , ARG B:20 , LYS B:24BINDING SITE FOR RESIDUE CL B 411
13BC4SOFTWAREMET C:17 , ARG C:20 , GLY C:21 , ALA C:22 , GLY C:23 , ARG C:63 , SER C:133 , SER C:135 , LYS C:136 , ALA C:137 , GLN C:164 , ALA C:201 , ASP C:202 , ASN C:212 , LYS C:213 , LYS C:238 , PHE C:279 , HOH C:501 , HOH C:601 , HOH C:688 , HOH C:697BINDING SITE FOR RESIDUE RI2 C 401
14BC5SOFTWARELYS C:224 , ARG C:227 , VAL C:228 , TRP C:229 , ASP C:288BINDING SITE FOR RESIDUE PEG C 402
15BC6SOFTWARELYS C:153BINDING SITE FOR RESIDUE PEG C 403
16BC7SOFTWARETRP C:146 , GLY C:149 , ASP C:151 , HOH C:678BINDING SITE FOR RESIDUE PEG C 404
17BC8SOFTWAREMET C:253 , ARG C:254 , TRP C:275 , ASN C:276BINDING SITE FOR RESIDUE PEG C 405
18BC9SOFTWARELYS C:162 , LYS C:213 , HOH C:703BINDING SITE FOR RESIDUE CL C 412
19CC1SOFTWARELYS C:192BINDING SITE FOR RESIDUE MG C 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VM6)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:160 -Pro A:161
2Arg B:160 -Pro B:161
3Arg C:160 -Pro C:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VM6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VM6)

(-) Exons   (0, 0)

(no "Exon" information available for 3VM6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
          R15PI_THEKO     2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhh..eeee..eeee...eeeee..hhhhhhhhhhh...eeeee.hhh.................hhhh..hhhhhh...........eeee.hhh..eee...eee....hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vm6 A   2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 


Chain B from PDB  Type:PROTEIN  Length:321
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
          R15PI_THEKO     2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhh..eeee..eeee...eeeee..hhhhhhhhhhh...eeeee.hhh.................hhhh..hhhhhh...........eeee.hhh..eee...eee....hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vm6 B   2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 


Chain C from PDB  Type:PROTEIN  Length:321
 aligned with R15PI_THEKO | Q5JFM9 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
          R15PI_THEKO     2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhh..eeee..eeee...eeeee..hhhhhhhhhhh...eeeee.hhh.................hhhh..hhhhhh...........eeee.hhh..eee...eee....hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vm6 C   2 AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED 322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VM6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VM6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VM6)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (R15PI_THEKO | Q5JFM9)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0044249    cellular biosynthetic process    The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
    GO:0044237    cellular metabolic process    The chemical reactions and pathways by which individual cells transform chemical substances.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    RI2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg A:160 - Pro A:161   [ RasMol ]  
    Arg B:160 - Pro B:161   [ RasMol ]  
    Arg C:160 - Pro C:161   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3vm6
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  R15PI_THEKO | Q5JFM9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.3.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  R15PI_THEKO | Q5JFM9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        R15PI_THEKO | Q5JFM9: 3a11 3a9c

(-) Related Entries Specified in the PDB File

3a11 UNLIGANDED FORM OF THE SAME PROTEIN
3a9c RUBP COMPLEX OF THE SAME PROTEIN