2ZEY - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   FAMILY 16 CARBOHYDRATE BINDING MODULE

Authors :   S. K. Nair, B. Bae

Date :   18 Dec 07 (Deposition) - 04 Mar 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   Family 16 Cbm-1 Mannopentaose Complex, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Bae, S. Ohene-Adjei, S. Kocherginskaya, R. I. Mackie, M. A. Spies, I. K. Cann, S. K. Nair
Molecular Basis For The Selectivity And Specificity Of Ligand Recognition By The Family 16 Carbohydrate-Binding Modules From Thermoanaerobacterium Polysaccharolyticum Mana
J. Biol. Chem. V. 283 12415 2008
PubMed-ID: 18025086 | Reference-DOI: 10.1074/JBC.M706513200

Molecule 1 - S-LAYER ASSOCIATED MULTIDOMAIN ENDOGLUCANASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	CBM-1, UNP RESIDUES 614-756
	Gene	:	CELA
	Organism Scientific	:	THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM
	Organism Taxid	:	44256
	Synonym	:	CBM-1 MANNOPENTAOSE COMPLEX

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	BMA	9	Ligand/Ion	BETA-D-MANNOSE
2	CA	2	Ligand/Ion	CALCIUM ION
3	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	BMA	4	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE

Biological Unit 3 (1, 5)

No.	Name	Count	Type	Full Name
1	BMA	5	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:79 , ILE A:97 , ASN A:99 , HIS B:85 , TYR B:93	BINDING SITE FOR RESIDUE BMA A 147
02	AC2	SOFTWARE	ASP A:79 , GLN A:95	BINDING SITE FOR RESIDUE BMA A 148
03	AC3	SOFTWARE	GLN A:83 , GLN A:95	BINDING SITE FOR RESIDUE BMA A 149
04	AC4	SOFTWARE	TRP A:22 , GLN A:23 , GLN A:83 , GLN A:123 , TRP A:127	BINDING SITE FOR RESIDUE BMA A 150
05	AC5	SOFTWARE	TRP A:22	BINDING SITE FOR RESIDUE BMA A 151
06	AC6	SOFTWARE	HIS A:85 , TYR A:93 , ILE B:97 , ASN B:99	BINDING SITE FOR RESIDUE MAN B 147
07	AC7	SOFTWARE	ASP B:79 , GLN B:95 , ILE B:97	BINDING SITE FOR RESIDUE BMA B 148
08	AC8	SOFTWARE	GLN B:83 , GLN B:95 , TRP B:127	BINDING SITE FOR RESIDUE BMA B 149
09	AC9	SOFTWARE	TRP B:22 , GLN B:23 , GLN B:83 , GLN B:123 , TRP B:127	BINDING SITE FOR RESIDUE BMA B 150
10	BC1	SOFTWARE	TRP B:22	BINDING SITE FOR RESIDUE BMA B 151
11	BC2	SOFTWARE	GLY A:11 , GLU A:13 , ASN A:35 , LEU A:38 , ASP A:139	BINDING SITE FOR RESIDUE CA A 152
12	BC3	SOFTWARE	GLY B:11 , GLU B:13 , ASN B:35 , LEU B:38 , ASP B:139	BINDING SITE FOR RESIDUE CA B 152

(no "SS Bond" information available for 2ZEY)

(no "Cis Peptide Bond" information available for 2ZEY)

(no "SAP(SNP)/Variant" information available for 2ZEY)

(no "PROSITE Motif" information available for 2ZEY)

(no "Exon" information available for 2ZEY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:145
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:149
                                   617       627       637       647       657       667       677       687       697       707       717       727       737       747         
         Q9ZA17_9THEO   608 KMGEGGVNMVSNPGFEDGLDSWQDWQQDMSAVPEAAHNGALGLKIGGGKAAGGGQDIPLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSKANLYVDDVYLVEV 756
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..----................ee....eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zey A   2 HM----VNMVSNPGFEDGLDSWQDWQQDMSAVPEAAHNGALGLKIGGGKAAGGGQDIPLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSKANLYVDDVYLVEV 146
                             |    |  7        17        27        37        47        57        67        77        87        97       107       117       127       137         
                             3    4

Chain B from PDB  Type:PROTEIN  Length:144
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:144
                                   622       632       642       652       662       672       682       692       702       712       722       732       742       752    
         Q9ZA17_9THEO   613 GVNMVSNPGFEDGLDSWQDWQQDMSAVPEAAHNGALGLKIGGGKAAGGGQDIPLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSKANLYVDDVYLVEV 756
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -CBM_4_9-2zeyB01 B:4-133                                                                                                           ------------- Pfam domains (1)
           Pfam domains (2) -CBM_4_9-2zeyB02 B:4-133                                                                                                           ------------- Pfam domains (2)
         Sec.struct. author .................ee....eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zey B   3 MVNMVSNPGFEDGLDSWQDWQQDMSAVPEAAHNGALGLKIGGGKAAGGGQDIPLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSKANLYVDDVYLVEV 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2ZEY)

(no "CATH Domain" information available for 2ZEY)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GBD (153)

Family: CBM_4_9 (7)

Caldanaerobius polysaccharolyticus (4)

1a	CBM_4_9-2zeyB01	B:4-133
1b	CBM_4_9-2zeyB02	B:4-133

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9ZA17_9THEO | Q9ZA17)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
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		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2zey)

Biological Units
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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	2zey
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	Q9ZA17_9THEO \| Q9ZA17	:	2zew 2zex 2zez 3oea 3oeb

Description

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Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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