2ZEZ - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   FAMILY 16 CARBOHYDRATE BINDING MODULE-2

Authors :   B. Bae, S. K. Nair

Date :   18 Dec 07 (Deposition) - 25 Mar 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Family 16 Carbohydrate Binding Module-2, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Bae, S. Ohene-Adjei, S. Kocherginskaya, R. I. Mackie, M. A. Spies, I. K. Cann, S. K. Nair
Molecular Basis For The Selectivity And Specificity Of Ligand Recognition By The Family 16 Carbohydrate-Binding Modules From Thermoanaerobacterium Polysaccharolyticum Mana
J. Biol. Chem. V. 283 12415 2008
PubMed-ID: 18025086 | Reference-DOI: 10.1074/JBC.M706513200

Molecule 1 - S-LAYER ASSOCIATED MULTIDOMAIN ENDOGLUCANASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	CBM-2, UNP RESIDUES 756-899
	Gene	:	CELA
	Organism Scientific	:	THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM
	Organism Taxid	:	44256
	Synonym	:	FAMILY 16 CBM-2

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:9 , GLU A:11 , GLY A:33 , LYS A:36 , ASP A:137	BINDING SITE FOR RESIDUE CA A 200
2	AC2	SOFTWARE	THR B:9 , GLU B:11 , GLY B:33 , LYS B:36 , ASP B:137	BINDING SITE FOR RESIDUE CA B 200
3	AC3	SOFTWARE	THR C:9 , GLU C:11 , GLY C:33 , LYS C:36 , ASP C:137	BINDING SITE FOR RESIDUE CA C 200
4	AC4	SOFTWARE	THR D:9 , GLU D:11 , GLY D:33 , LYS D:36 , ASP D:137	BINDING SITE FOR RESIDUE CA D 200

(no "SS Bond" information available for 2ZEZ)

(no "Cis Peptide Bond" information available for 2ZEZ)

(no "SAP(SNP)/Variant" information available for 2ZEZ)

(no "PROSITE Motif" information available for 2ZEZ)

(no "Exon" information available for 2ZEZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:142
                                   766       776       786       796       806       816       826       836       846       856       866       876       886       896  
         Q9ZA17_9THEO   757 SNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 898
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zez A   2 SNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:141
                                   767       777       787       797       807       817       827       837       847       857       867       877       887       897 
         Q9ZA17_9THEO   758 NLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 898
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zez B   3 NLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 143
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Chain C from PDB  Type:PROTEIN  Length:143
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:143
                                   765       775       785       795       805       815       825       835       845       855       865       875       885       895   
         Q9ZA17_9THEO   756 VSNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 898
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zez C   1 VSNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain D from PDB  Type:PROTEIN  Length:142
 aligned with Q9ZA17_9THEO | Q9ZA17 from UniProtKB/TrEMBL  Length:1097

    Alignment length:142
                                   766       776       786       796       806       816       826       836       846       856       866       876       886       896  
         Q9ZA17_9THEO   757 SNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 898
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeehhhh.....eeee.....eeeeee.......eeeeeeeeee.......eeeeeeee.......eeeeeeee.....eeeeeeee.........eeeeee.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zez D   2 SNLIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTKGFKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASNADFYADNITLVE 143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2ZEZ)

(no "CATH Domain" information available for 2ZEZ)

(no "Pfam Domain" information available for 2ZEZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q9ZA17_9THEO | Q9ZA17)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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	2zez
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	Q9ZA17_9THEO \| Q9ZA17	:	2zew 2zex 2zey 3oea 3oeb

Description

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Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

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