2Z6W - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN D IN COMPLEX WITH CYCLOSPORIN A

Authors :   K. Kajitani, M. Fujihashi, Y. Kobayashi, S. Shimizu, Y. Tsujimoto, K. M

Date :   09 Aug 07 (Deposition) - 29 Apr 08 (Release) - 27 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.96

Chains :   Asym. Unit : A,B,M,N
Biol. Unit 1: A,M  (1x)
Biol. Unit 2: B,N  (1x)

Keywords :   Isomerase-Immunosuppressant Complex, Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosuppressant, Cyclophilin D (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Kajitani, M. Fujihashi, Y. Kobayashi, S. Shimizu, Y. Tsujimoto, K. Miki
Crystal Structure Of Human Cyclophilin D In Complex With It Inhibitor, Cyclosporin A At 0. 96-A Resolution.
Proteins V. 70 1635 2008
PubMed-ID: 18076075 | Reference-DOI: 10.1002/PROT.21855

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
	Chains	:	A, B
	EC Number	:	5.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-21A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 2-165
	Gene	:	PPIF, CYP3
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PPIASE, ROTAMASE, CYCLOPHILIN D

Molecule 2 - CYCLOSPORIN A
	Chains	:	M, N
	Engineered	:	YES
	Organism Scientific	:	TOLYPOCLADIUM INFLATUM
	Organism Taxid	:	29910
	Synonym	:	CICLOSPORIN, CICLOSPORINE
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	M	N
Biological Unit 1 (1x)	:	A		M
Biological Unit 2 (1x)	:		B		N

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 19)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	BMT	2	Mod. Amino Acid	4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3	CIT	1	Ligand/Ion	CITRIC ACID
4	DAL	2	Mod. Amino Acid	D-ALANINE
5	MLE	8	Mod. Amino Acid	N-METHYLLEUCINE
6	MVA	2	Mod. Amino Acid	N-METHYLVALINE
7	SAR	2	Mod. Amino Acid	SARCOSINE

Biological Unit 1 (7, 10)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	BMT	1	Mod. Amino Acid	4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3	CIT	1	Ligand/Ion	CITRIC ACID
4	DAL	1	Mod. Amino Acid	D-ALANINE
5	MLE	4	Mod. Amino Acid	N-METHYLLEUCINE
6	MVA	1	Mod. Amino Acid	N-METHYLVALINE
7	SAR	1	Mod. Amino Acid	SARCOSINE

Biological Unit 2 (6, 9)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	BMT	1	Mod. Amino Acid	4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3	CIT	-1	Ligand/Ion	CITRIC ACID
4	DAL	1	Mod. Amino Acid	D-ALANINE
5	MLE	4	Mod. Amino Acid	N-METHYLLEUCINE
6	MVA	1	Mod. Amino Acid	N-METHYLVALINE
7	SAR	1	Mod. Amino Acid	SARCOSINE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:50 , SER A:51 , THR A:52 , HIS A:70 , GLY A:80 , SER A:81 , ARG A:82 , LYS A:155 , HOH A:2149 , HOH A:2257 , HOH A:2258	BINDING SITE FOR RESIDUE CIT A 3001
2	AC2	SOFTWARE	ARG A:55 , PHE A:60 , GLN A:63 , GLY A:72 , ALA A:101 , ASN A:102 , ALA A:103 , GLN A:111 , PHE A:113 , TRP A:121 , HIS A:126 , HOH A:2135 , LEU B:5 , SER B:81 , ALA B:103 , GLU B:134 , LEU B:164 , HOH B:2161 , HOH B:2199 , HOH B:2244 , HOH M:2001 , HOH M:2002 , HOH M:2003 , HOH M:2004 , HOH M:2005 , HOH M:2006 , HOH M:2007 , HOH M:2008 , HOH M:2009 , HOH M:2010	BINDING SITE FOR CHAIN M OF CYCLOSPORIN A
3	AC3	SOFTWARE	GLY A:104 , HOH A:2197 , ARG B:37 , GLU B:43 , ARG B:55 , PHE B:60 , GLN B:63 , GLY B:72 , ALA B:101 , ASN B:102 , GLN B:111 , PHE B:113 , TRP B:121 , HIS B:126 , GLN B:163 , LEU B:164 , SER B:165 , HOH B:2110 , HOH B:2124 , HOH B:2218 , HOH N:2001 , HOH N:2005 , HOH N:2006 , HOH N:2007 , HOH N:2008	BINDING SITE FOR CHAIN N OF CYCLOSPORIN A

(no "SS Bond" information available for 2Z6W)

(no "Cis Peptide Bond" information available for 2Z6W)

(no "SAP(SNP)/Variant" information available for 2Z6W)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIF_HUMAN	49-205	2	A:7-163 B:7-163
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIF_HUMAN	90-107	2	A:48-65 B:48-65

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIF_HUMAN	49-205	1	A:7-163 -
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIF_HUMAN	90-107	1	A:48-65 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CSA_PPIASE_2	PS50072	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	PPIF_HUMAN	49-205	1	- B:7-163
2	CSA_PPIASE_1	PS00170	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	PPIF_HUMAN	90-107	1	- B:48-65

Asymmetric Unit (6, 12)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000225174	1b	ENSE00001554110	chr10:81107234-81107499	266	PPIF_HUMAN	1-65	65	2	A:2-23 B:2-23	22 22
1.2	ENST00000225174	2	ENSE00000998348	chr10:81108832-81108862	31	PPIF_HUMAN	66-76	11	2	A:24-34 B:24-34	11 11
1.3a	ENST00000225174	3a	ENSE00000710825	chr10:81109421-81109509	89	PPIF_HUMAN	76-105	30	2	A:34-63 B:34-63	30 30
1.4a	ENST00000225174	4a	ENSE00000429803	chr10:81111243-81111339	97	PPIF_HUMAN	106-138	33	2	A:64-96 B:64-96	33 33
1.5	ENST00000225174	5	ENSE00000710835	chr10:81112073-81112148	76	PPIF_HUMAN	138-163	26	2	A:96-121 B:96-121	26 26
1.6c	ENST00000225174	6c	ENSE00001136191	chr10:81113463-81115093	1631	PPIF_HUMAN	163-207	45	2	A:121-165 B:121-165	45 45

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with PPIF_HUMAN | P30405 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:164
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    
           PPIF_HUMAN    44 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207
               SCOP domains d2z6wa_ A: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh..........eeeee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhhh..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----CSA_PPIASE_2  PDB: A:7-163 UniProt: 49-205                                                                                                                   -- PROSITE (1)
                PROSITE (2) ----------------------------------------------CSA_PPIASE_1      ---------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1b  PDB: A:2-23Exon 1.2   -----------------------------Exon 1.4a  PDB: A:64-96          ------------------------Exon 1.6c  PDB: A:121-165 UniProt: 163-207    Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3a  PDB: A:34-63       --------------------------------Exon 1.5  PDB: A:96-121   -------------------------------------------- Transcript 1 (2)
                 2z6w A   2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain B from PDB  Type:PROTEIN  Length:164
 aligned with PPIF_HUMAN | P30405 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:164
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    
           PPIF_HUMAN    44 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207
               SCOP domains d2z6wb_ B: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Pro_isomerase-2z6wB01 B:7-163                                                                                                                                -- Pfam domains (1)
           Pfam domains (2) -----Pro_isomerase-2z6wB02 B:7-163                                                                                                                                -- Pfam domains (2)
         Sec.struct. author ...eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh..........eeeee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----CSA_PPIASE_2  PDB: B:7-163 UniProt: 49-205                                                                                                                   -- PROSITE (1)
                PROSITE (2) ----------------------------------------------CSA_PPIASE_1      ---------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1b  PDB: B:2-23Exon 1.2   -----------------------------Exon 1.4a  PDB: B:64-96          ------------------------Exon 1.6c  PDB: B:121-165 UniProt: 163-207    Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3a  PDB: B:34-63       --------------------------------Exon 1.5  PDB: B:96-121   -------------------------------------------- Transcript 1 (2)
                 2z6w B   2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain M from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 2z6w M   1 xxxxxxxxVxA  11
                            ||||||||10 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE
                                    10-MLE

Chain N from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 2z6w N   1 xxxxxxxxVxA  11
                            ||||||||10 
                            |||||||| | 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: Cyclophilin-like (169)

Superfamily: Cyclophilin-like (169)

Family: Cyclophilin (peptidylprolyl isomerase) (160)

Protein domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F (25)

Human (Homo sapiens) [TaxId: 9606] (25)

1a	d2z6wa_	A:
1b	d2z6wb_	B:

(no "CATH Domain" information available for 2Z6W)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Cyclophil-like (65)

Family: Pro_isomerase (53)

Homo sapiens (Human) (42)

1a	Pro_isomerase-2z6wB01	B:7-163
1b	Pro_isomerase-2z6wB02	B:7-163

Asymmetric Unit(hide GO term definitions)

Chain A,B (PPIF_HUMAN | P30405)

molecular function
	GO:0016018	cyclosporin A binding	Interacting selectively and non-covalently with cyclosporin A, a cyclic undecapeptide that contains several N-methylated and unusual amino acids.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0042277	peptide binding	Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0008637	apoptotic mitochondrial changes	The morphological and physiological alterations undergone by mitochondria during apoptosis.
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0071243	cellular response to arsenic-containing substance	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
	GO:0071277	cellular response to calcium ion	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
	GO:0070301	cellular response to hydrogen peroxide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
	GO:0070266	necroptotic process	A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former.
	GO:0032780	negative regulation of ATPase activity	Any process that stops or reduces the rate of ATP hydrolysis by an ATPase.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway.
	GO:0090324	negative regulation of oxidative phosphorylation	Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
	GO:2000276	negative regulation of oxidative phosphorylation uncoupler activity	Any process that stops, prevents or reduces the frequency, rate or extent of oxidative phosphorylation uncoupler activity.
	GO:0090201	negative regulation of release of cytochrome c from mitochondria	Any process that decreases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
	GO:0090200	positive regulation of release of cytochrome c from mitochondria	Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
	GO:0012501	programmed cell death	A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
	GO:0042981	regulation of apoptotic process	Any process that modulates the occurrence or rate of cell death by apoptotic process.
	GO:0046902	regulation of mitochondrial membrane permeability	Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane.
	GO:1902445	regulation of mitochondrial membrane permeability involved in programmed necrotic cell death	Any regulation of mitochondrial membrane permeability that is involved in programmed necrotic cell death.
	GO:0010939	regulation of necrotic cell death	Any process that modulates the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents.
	GO:0010849	regulation of proton-transporting ATPase activity, rotational mechanism	Any process that modulates the rate of ATP hydrolysis by an ATPase. Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
	GO:0002931	response to ischemia	Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a inadequate blood supply.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005753	mitochondrial proton-transporting ATP synthase complex	A proton-transporting ATP synthase complex found in the mitochondrial membrane.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2z6w)

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Access by PDB/NDB ID
	2z6w
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	5.2.1.8
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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
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Access by UniProt ID/Accession number
	PPIF_HUMAN \| P30405
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1bck	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN C
1c5f	CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A
1csa	SOLUTION STRUCTURE OF E.COLI CYCLOPHILIN (F112W) COMPLEXED WITH CYCLOSPORIN A
1cwa	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
1cwb	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5
1cwc	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwf	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN D
1cwh	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A MODIFIED AT POSITION 7
1cwi	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITION 7
1cwj	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7.
1cwk	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7.
1cwl	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwm	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8
1cwo	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH NODIFIED CYCLOSPORIN C AT POSITIONS 1, AND 9
1cya	SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WIYH CYCLOSPORIN A
1cyb	SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A
1cyn	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN B COMPLEXED WITH MODIFIED CYCLOSPORIN A
1ikf	CRYSTAL STRUCTURE OF CTCLOSPORIN-FAB COMPLEX
1m63	CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN-CYCLOSPORIN COMPLEX
1mf8	CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITH HUMAN CYCLOPHILIN AND CYCLOSPORIN A
1mik	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 6
1qng	CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A
1qnh	CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN (DOUBLE MUTANT) COMPLEXED WITH CYCLOSPORIN A
1xq7	CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A
2esl	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A
2oju	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN J COMPLEXED WITH CYCLOSPORIN A
2poy	CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM IOWA II CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
2rma	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
2rmb	CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5
2rmc	CRYSTAL STRUCTURE OF MURINE CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A
2wfj	CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF HUMAN CYCLOPHILIN G COMPLEXED WITH CYCLOSPORIN A
2x2c	CRYSTAL STRUCTURE OF HUMAN ACETYL-CYPA COMPLEXED WITH CYCLOSPORINE A
2x7k	CRYSTAL STRUCTURE OF PPIL1 COMPLEXED WITH CYCLOSPORINE A
3bo7	CRYSTAL STRUCTURE OF CYCLOSPHILIN A FROM TOXOPLASMA GONDII COMPLEXED WIT CYCLOSPORIN A
3cys	SOLUTION STRUCTURE OF THE HUMAN CYCLOSPORIN A COMPLEXED WITH CYCLOSPORIN A
3eov	CRYSTAL STRUCTURE OF CYCLOPHILIN FROM LEISHMANIA DONOVANI COMPLEXED WITH CYCLOSPORIN A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 19)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (6, 12)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (33, 33)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File