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2Z6W
Biol. Unit 2
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Asym.Unit (146 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN D IN COMPLEX WITH CYCLOSPORIN A
Authors
:
K. Kajitani, M. Fujihashi, Y. Kobayashi, S. Shimizu, Y. Tsujimoto, K. M
Date
:
09 Aug 07 (Deposition) - 29 Apr 08 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.96
Chains
:
Asym. Unit : A,B,M,N
Biol. Unit 1: A,M (1x)
Biol. Unit 2: B,N (1x)
Keywords
:
Isomerase-Immunosuppressant Complex, Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosuppressant, Cyclophilin D
(Keyword Search:
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Reference
:
K. Kajitani, M. Fujihashi, Y. Kobayashi, S. Shimizu, Y. Tsujimoto, K. Miki
Crystal Structure Of Human Cyclophilin D In Complex With It Inhibitor, Cyclosporin A At 0. 96-A Resolution.
Proteins V. 70 1635 2008
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Hetero Components
(6, 9)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
3a: CITRIC ACID (CITa)
4a: D-ALANINE (DALa)
4b: D-ALANINE (DALb)
5a: N-METHYLLEUCINE (MLEa)
5b: N-METHYLLEUCINE (MLEb)
5c: N-METHYLLEUCINE (MLEc)
5d: N-METHYLLEUCINE (MLEd)
5e: N-METHYLLEUCINE (MLEe)
5f: N-METHYLLEUCINE (MLEf)
5g: N-METHYLLEUCINE (MLEg)
5h: N-METHYLLEUCINE (MLEh)
6a: N-METHYLVALINE (MVAa)
6b: N-METHYLVALINE (MVAb)
7a: SARCOSINE (SARa)
7b: SARCOSINE (SARb)
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No.
Name
Count
Type
Full Name
1
ABA
1
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
1
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
CIT
-1
Ligand/Ion
CITRIC ACID
4
DAL
1
Mod. Amino Acid
D-ALANINE
5
MLE
4
Mod. Amino Acid
N-METHYLLEUCINE
6
MVA
1
Mod. Amino Acid
N-METHYLVALINE
7
SAR
1
Mod. Amino Acid
SARCOSINE
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG A:55 , PHE A:60 , GLN A:63 , GLY A:72 , ALA A:101 , ASN A:102 , ALA A:103 , GLN A:111 , PHE A:113 , TRP A:121 , HIS A:126 , HOH A:2135 , LEU B:5 , SER B:81 , ALA B:103 , GLU B:134 , LEU B:164 , HOH B:2161 , HOH B:2199 , HOH B:2244 , HOH M:2001 , HOH M:2002 , HOH M:2003 , HOH M:2004 , HOH M:2005 , HOH M:2006 , HOH M:2007 , HOH M:2008 , HOH M:2009 , HOH M:2010
BINDING SITE FOR CHAIN M OF CYCLOSPORIN A
2
AC3
SOFTWARE
GLY A:104 , HOH A:2197 , ARG B:37 , GLU B:43 , ARG B:55 , PHE B:60 , GLN B:63 , GLY B:72 , ALA B:101 , ASN B:102 , GLN B:111 , PHE B:113 , TRP B:121 , HIS B:126 , GLN B:163 , LEU B:164 , SER B:165 , HOH B:2110 , HOH B:2124 , HOH B:2218 , HOH N:2001 , HOH N:2005 , HOH N:2006 , HOH N:2007 , HOH N:2008
BINDING SITE FOR CHAIN N OF CYCLOSPORIN A
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (B:7-163)
2: CSA_PPIASE_1 (B:48-65)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIF_HUMAN
49-205
1
-
B:7-163
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIF_HUMAN
90-107
1
-
B:48-65
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2z6wa_ (A:)
1b: SCOP_d2z6wb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d2z6wa_
A:
1b
d2z6wb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_2z6wB01 (B:7-163)
1b: PFAM_Pro_isomerase_2z6wB02 (B:7-163)
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Clans
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Organisms
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)
Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-2z6wB01
B:7-163
1b
Pro_isomerase-2z6wB02
B:7-163
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