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(-) Description

Title :  CRYSTAL STRUCTURE OF NATIVE-ORF134
 
Authors :  Y. Tomimoto, K. Ihara, T. Onizuka, S. Kanai, H. Ashida, A. Yokota, S. Tanaka, H. Miyasaka, Y. Yamada, R. Kato, S. Wakatsuki
Date :  12 Jun 07  (Deposition) - 24 Jun 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.97
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Chaperone, Helix Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tomimoto, K. Ihara, T. Onizuka, S. Kanai, H. Ashida, A. Yokota, S. Tanaka, H. Miyasaka, Y. Yamada, R. Kato, S. Wakatsuki
Crystal Structure Of Orf134
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORF134
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System Plasmid: PIVEX3.2
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNECHOCOCCUS SP.
    Other Details: IN VITRO TRANSLATION
    Strain: PCC7002
    Synonym: RBCX

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2Z46)

(-) Sites  (0, 0)

(no "Site" information available for 2Z46)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z46)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
               SCOP domains d2z46a_ A: RuBisCo chaperone RbcX                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 A   2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
               SCOP domains d2z46b_ B: RuBisCo chaperone RbcX                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 B   2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:109
                                    12        22        32        42        52        62        72        82        92       102         
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
               SCOP domains d2z46c_ C: RuBisCo chaperone RbcX                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 C   3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
                                    12        22        32        42        52        62        72        82        92       102         


Chain D from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
         Q44177_SYNP2     1 MEFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
               SCOP domains d2z46d_ D: RuBisCo chaperone RbcX                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 D   1 MEFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain E from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    12        22        32        42        52        62        72        82        92       102       112
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
               SCOP domains d2z46e_ E: RuBisCo chaperone RbcX                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 E   3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
                                    12        22        32        42        52        62        72        82        92       102       112


Chain F from PDB  Type:PROTEIN  Length:111
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:111
                                    11        21        31        41        51        61        71        81        91       101       111 
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
               SCOP domains d2z46f_ F: RuBisCo chaperone RbcX                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) RcbX-2z46F01 F:2-111                                                                                          - Pfam domains (1)
           Pfam domains (2) RcbX-2z46F02 F:2-111                                                                                          - Pfam domains (2)
           Pfam domains (3) RcbX-2z46F03 F:2-111                                                                                          - Pfam domains (3)
           Pfam domains (4) RcbX-2z46F04 F:2-111                                                                                          - Pfam domains (4)
           Pfam domains (5) RcbX-2z46F05 F:2-111                                                                                          - Pfam domains (5)
           Pfam domains (6) RcbX-2z46F06 F:2-111                                                                                          - Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2z46 F   2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
                                    11        21        31        41        51        61        71        81        91       101       111
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Z46)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: RcbX] (13)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q44177_SYNP2 | Q44177)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q44177_SYNP2 | Q44177: 2pei 2pej 2pek 2pem 2pen 2peq 2z44 2z45

(-) Related Entries Specified in the PDB File

2z44 2z45