2Z45 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ZN-BOUND ORF134

Authors :   Y. Tomimoto, K. Ihara, T. Onizuka, S. Kanai, H. Ashida, A. Yokota, S. Tanaka, H. Miyasaka, Y. Yamada, R. Kato, S. Wakatsuki

Date :   12 Jun 07 (Deposition) - 24 Jun 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A,B

Keywords :   Chaperone, Helix Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Tomimoto, K. Ihara, T. Onizuka, S. Kanai, H. Ashida, A. Yokota, S. Tanaka, H. Miyasaka, Y. Yamada, R. Kato, S. Wakatsuki
Crystal Structure Of Orf134
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ORF134
	Chains	:	A, B
	Engineered	:	YES
	Expression System Plasmid	:	PIVEX3.2
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SYNECHOCOCCUS SP.
	Other Details	:	IN VITRO TRANSLATION
	Strain	:	PCC7002
	Synonym	:	RBCX

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 9)

No.	Name	Count	Type	Full Name
1	ZN	9	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:88 , HOH A:1048 , GLU B:43 , GLU B:84 , HOH B:1011	BINDING SITE FOR RESIDUE ZN A 1001
2	AC2	SOFTWARE	GLU A:84 , GLU B:43 , GLU B:88 , HOH B:1017	BINDING SITE FOR RESIDUE ZN A 1002
3	AC3	SOFTWARE	GLU A:76 , HOH A:1011 , HOH A:1046 , HIS B:101	BINDING SITE FOR RESIDUE ZN A 1003
4	AC4	SOFTWARE	HIS B:48 , GLU B:63 , HOH B:1050 , HOH B:1055	BINDING SITE FOR RESIDUE ZN B 1004
5	AC5	SOFTWARE	HIS A:101 , ASP B:54 , GLU B:58 , HOH B:1072	BINDING SITE FOR RESIDUE ZN B 1005
6	AC6	SOFTWARE	GLU A:80 , HOH A:1050 , GLU B:66 , HOH B:1013 , HOH B:1089	BINDING SITE FOR RESIDUE ZN B 1006
7	AC7	SOFTWARE	GLU A:58 , HOH A:1029 , GLU B:52 , HOH B:1078	BINDING SITE FOR RESIDUE ZN A 1007
8	AC8	SOFTWARE	HIS A:48 , GLU A:63 , HOH A:1014 , HOH A:1070	BINDING SITE FOR RESIDUE ZN A 1008
9	AC9	SOFTWARE	ARG A:102 , GLU B:76 , HOH B:1098 , HOH B:1099	BINDING SITE FOR RESIDUE ZN B 1009

(no "SS Bond" information available for 2Z45)

(no "Cis Peptide Bond" information available for 2Z45)

(no "SAP(SNP)/Variant" information available for 2Z45)

(no "PROSITE Motif" information available for 2Z45)

(no "Exon" information available for 2Z45)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:109
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:109
                                    12        22        32        42        52        62        72        82        92       102         
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
               SCOP domains d2z45a_ A: RuBisCo chaperone RbcX                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2z45 A   3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
                                    12        22        32        42        52        62        72        82        92       102

Chain B from PDB  Type:PROTEIN  Length:108
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:108
                                    12        22        32        42        52        62        72        82        92       102        
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
               SCOP domains d2z45b_ B: RuBisCo chaperone RbcX                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) RcbX-2z45B01 B:3-110                                                                                         Pfam domains (1)
           Pfam domains (2) RcbX-2z45B02 B:3-110                                                                                         Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2z45 B   3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
                                    12        22        32        42        52        62        72        82        92       102

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: RbcX-like (15)

Superfamily: RbcX-like (15)

Family: RbcX-like (13)

Protein domain: RuBisCo chaperone RbcX (13)

Synechococcus sp. [TaxId: 32049] (4)

1a	d2z45a_	A:
1b	d2z45b_	B:

(no "CATH Domain" information available for 2Z45)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: RcbX] (13)

Family: RcbX (13)

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) (9)

1a	RcbX-2z45B01	B:3-110
1b	RcbX-2z45B02	B:3-110

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q44177_SYNP2 | Q44177)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2z45)

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	2z45
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	Q44177_SYNP2 \| Q44177
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	Q44177_SYNP2 \| Q44177
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UniProtKB/TrEMBL
	Q44177_SYNP2 \| Q44177	:	2pei 2pej 2pek 2pem 2pen 2peq 2z44 2z46

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (1, 1)

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