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(-) Description

Title :  CRYSTAL STRUCTURE OF RBCX POINT MUTANT Q29A
 
Authors :  S. Saschenbrecker, A. Bracher, K. Vasudeva Rao, B. Vasudeva Rao, F. U M. Hayer-Hartl
Date :  03 Apr 07  (Deposition) - 10 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  C (1x),D (1x),E (1x),F (1x)
Keywords :  Helix Bundle, Protein Complex Assembly, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Saschenbrecker, A. Bracher, K. V. Rao, B. V. Rao, F. U. Hartl, M. Hayer-Hartl
Structure And Function Of Rbcx, An Assembly Chaperone For Hexadecameric Rubisco.
Cell(Cambridge, Mass. ) V. 129 1189 2007
PubMed-ID: 17574029  |  Reference-DOI: 10.1016/J.CELL.2007.04.025

(-) Compounds

Molecule 1 - ORF134
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET11A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneRBCX
    MutationYES
    Organism ScientificSYNECHOCOCCUS SP.
    Organism Taxid32049
    StrainPCC 7002

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF
Biological Unit 4 (1x)  C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2PEK)

(-) Sites  (0, 0)

(no "Site" information available for 2PEK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PEK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PEK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PEK)

(-) Exons   (0, 0)

(no "Exon" information available for 2PEK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    11        21        31        41        51        61        71        81        91       101       111
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
               SCOP domains d2peka1 A:2-111 RuBisCo chaperone RbcX                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2pek A   2 EFKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
                                    11        21        31        41        51        61        71        81        91       101       111

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:109
                                    12        22        32        42        52        62        72        82        92       102         
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
               SCOP domains d2pekb_ B: RuBisCo chaperone RbcX                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2pek B   3 FKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
                                    12        22        32        42        52        62        72        82        92       102         

Chain C from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    11        21        31        41        51        61        71        81        91       101       111
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
               SCOP domains d2pekc_ C: RuBisCo chaperone RbcX                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2pek C   2 EFKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQ 111
                                    11        21        31        41        51        61        71        81        91       101       111

Chain D from PDB  Type:PROTEIN  Length:108
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q44177_SYNP2     2 EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERL 109
               SCOP domains d2pekd_ D: RuBisCo chaperone RbcX                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2pek D   2 EFKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERL 109
                                    11        21        31        41        51        61        71        81        91       101        

Chain E from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    12        22        32        42        52        62        72        82        92       102       112
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
               SCOP domains d2peke_ E: RuBisCo chaperone RbcX                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2pek E   3 FKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
                                    12        22        32        42        52        62        72        82        92       102       112

Chain F from PDB  Type:PROTEIN  Length:110
 aligned with Q44177_SYNP2 | Q44177 from UniProtKB/TrEMBL  Length:134

    Alignment length:110
                                    12        22        32        42        52        62        72        82        92       102       112
         Q44177_SYNP2     3 FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
               SCOP domains d2pekf_ F: RuBisCo chaperone RbcX                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) RcbX-2pekF01 F:3-111                                                                                         - Pfam domains (1)
           Pfam domains (2) RcbX-2pekF02 F:3-111                                                                                         - Pfam domains (2)
           Pfam domains (3) RcbX-2pekF03 F:3-111                                                                                         - Pfam domains (3)
           Pfam domains (4) RcbX-2pekF04 F:3-111                                                                                         - Pfam domains (4)
           Pfam domains (5) RcbX-2pekF05 F:3-111                                                                                         - Pfam domains (5)
           Pfam domains (6) RcbX-2pekF06 F:3-111                                                                                         - Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2pek F   3 FKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQV 112
                                    12        22        32        42        52        62        72        82        92       102       112

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2PEK)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q44177_SYNP2 | Q44177)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q44177_SYNP2 | Q441772pei 2pej 2pem 2pen 2peq 2z44 2z45 2z46

(-) Related Entries Specified in the PDB File

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2pem CRYSTAL STRUCTURE OF RBCX IN COMPLEX WITH SUBSTRATE
2pen CRYSTAL STRUCTURE OF RBCX, CRYSTAL FORM I
2peo CRYSTAL STRUCTURE OF RBCX FROM ANABAENA CA
2peq CRYSTAL STRUCTURE OF RBCX, CRYSTAL FORM II