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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS SUBTILIS CODW, A NON-CANONICAL HSLV-LIKE PEPTIDASE WITH AN IMPAIRED CATALYTIC APPARATUS
 
Authors :  S. H. Rho, H. H. Park, G. B. Kang, Y. J. Lim, M. S. Kang, B. K. Lim, I. S. Seong, C. H. Chung, J. Wang, S. H. Eom
Date :  03 Jun 07  (Deposition) - 25 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Biol. Unit 2:  G,H,I,J,K,L  (2x)
Keywords :  N-Terminal Nucleophile Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Rho, H. H. Park, G. B. Kang, Y. J. Im, M. S. Kang, B. K. Lim, I. S. Seong, J. Seol, C. H. Chung, J. Wang, S. H. Eom
Crystal Structure Of Bacillus Subtilis Codw, A Noncanonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus
Proteins V. 71 1020 2007
PubMed-ID: 17979190  |  Reference-DOI: 10.1002/PROT.21758
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP-DEPENDENT PROTEASE HSLV
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 3.4.25.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CODW
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: ATP-DEPENDENT PROTEASE CODW

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (2x): ABCDEF      
Biological Unit 2 (2x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1NA12Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:164 , CYS A:167 , THR A:170BINDING SITE FOR RESIDUE NA A 1001
02AC2SOFTWAREGLY B:164 , CYS B:167 , THR B:170 , HOH B:1010BINDING SITE FOR RESIDUE NA B 1002
03AC3SOFTWAREGLY C:164 , CYS C:167 , THR C:170 , HOH C:1024BINDING SITE FOR RESIDUE NA C 1003
04AC4SOFTWAREGLY D:164 , CYS D:167 , THR D:170BINDING SITE FOR RESIDUE NA D 1004
05AC5SOFTWAREGLY E:164 , CYS E:167 , THR E:170BINDING SITE FOR RESIDUE NA E 1005
06AC6SOFTWAREGLY F:164 , CYS F:167 , THR F:170BINDING SITE FOR RESIDUE NA F 1006
07AC7SOFTWAREGLY G:164 , CYS G:167 , THR G:170BINDING SITE FOR RESIDUE NA G 1007
08AC8SOFTWAREGLY J:164 , CYS J:167 , THR J:170BINDING SITE FOR RESIDUE NA J 1008
09AC9SOFTWAREGLY I:164 , CYS I:167 , THR I:170BINDING SITE FOR RESIDUE NA I 1009
10BC1SOFTWAREGLY H:164 , CYS H:167BINDING SITE FOR RESIDUE NA H 1010
11BC2SOFTWAREGLY K:164 , CYS K:167BINDING SITE FOR RESIDUE NA K 1011
12BC3SOFTWAREGLY L:164 , CYS L:167 , THR L:170BINDING SITE FOR RESIDUE NA L 1012

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z3B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z3B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z3B)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_BETA_2PS51476 Proteasome beta-type subunit profile.CLPQ_BACSU6-180
 
 
 
 
 
 
 
 
 
 
 		  12A:5-179
B:5-179
C:5-179
D:5-179
E:5-179
F:5-179
G:5-179
H:5-179
I:5-179
J:5-179
K:5-179
L:5-179
Biological Unit 1 (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_BETA_2PS51476 Proteasome beta-type subunit profile.CLPQ_BACSU6-180
 
 
 
 
 
 
 
 
 
 
 		  12A:5-179
B:5-179
C:5-179
D:5-179
E:5-179
F:5-179
-
-
-
-
-
-
Biological Unit 2 (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_BETA_2PS51476 Proteasome beta-type subunit profile.CLPQ_BACSU6-180
 
 
 
 
 
 
 
 
 
 
 		  12-
-
-
-
-
-
G:5-179
H:5-179
I:5-179
J:5-179
K:5-179
L:5-179

(-) Exons   (0, 0)

(no "Exon" information available for 2Z3B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3ba_ A: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bA00 A:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: A:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b A   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain B from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bb_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bB00 B:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee..eeeeee...eee...eeee.....eeeehhhheeeee..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: B:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b B   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain C from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bc_ C: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bC00 C:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: C:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b C   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain D from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bd_ D: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bD00 D:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh...eeee....eeee.....ee.....eeee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: D:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b D   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain E from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3be_ E: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bE00 E:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeeee...eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: E:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b E   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain F from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bf_ F: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bF00 F:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: F:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b F   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain G from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bg_ G: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bG00 G:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeee....eeeee...eee...eeee.....eeeehhh.eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh...eeeee...eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: G:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b G   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain H from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bh_ H: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bH00 H:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee..eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeee....eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: H:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b H   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain I from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bi_ I: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bI00 I:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeeee...eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: I:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b I   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain J from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bj_ J: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bJ00 J:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee..eeeeeee..eeeeeee..eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........eeee....eeee.....ee.....eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: J:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b J   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain K from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bk_ K: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bK00 K:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee..eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhh...eeeee...eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: K:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b K   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180


Chain L from PDB  Type:PROTEIN  Length:180
 aligned with CLPQ_BACSU | P39070 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           CLPQ_BACSU     2 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 181
               SCOP domains d2z3bl_ L: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2z3bL00 L:1-180 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
           Pfam domains (1) -Proteasome-2z3bL01 L:2-179                                                                                                                                                        - Pfam domains (1)
           Pfam domains (2) -Proteasome-2z3bL02 L:2-179                                                                                                                                                        - Pfam domains (2)
           Pfam domains (3) -Proteasome-2z3bL03 L:2-179                                                                                                                                                        - Pfam domains (3)
           Pfam domains (4) -Proteasome-2z3bL04 L:2-179                                                                                                                                                        - Pfam domains (4)
           Pfam domains (5) -Proteasome-2z3bL05 L:2-179                                                                                                                                                        - Pfam domains (5)
           Pfam domains (6) -Proteasome-2z3bL06 L:2-179                                                                                                                                                        - Pfam domains (6)
           Pfam domains (7) -Proteasome-2z3bL07 L:2-179                                                                                                                                                        - Pfam domains (7)
           Pfam domains (8) -Proteasome-2z3bL08 L:2-179                                                                                                                                                        - Pfam domains (8)
           Pfam domains (9) -Proteasome-2z3bL09 L:2-179                                                                                                                                                        - Pfam domains (9)
          Pfam domains (10) -Proteasome-2z3bL10 L:2-179                                                                                                                                                        - Pfam domains (10)
          Pfam domains (11) -Proteasome-2z3bL11 L:2-179                                                                                                                                                        - Pfam domains (11)
          Pfam domains (12) -Proteasome-2z3bL12 L:2-179                                                                                                                                                        - Pfam domains (12)
         Sec.struct. author ......eeeeeee..eeeeee...eee...eeee.....eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh...eeeee...eeee.....ee.....eeeee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----PROTEASOME_BETA_2  PDB: L:5-179 UniProt: 6-180                                                                                                                                 - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2z3b L   1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: NTN (93)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (CLPQ_BACSU | P39070)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
    GO:0009376    HslUV protease complex    A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.

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  2z3b
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  CLPQ_BACSU | P39070
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPQ_BACSU | P39070: 1yyf 2z3a

(-) Related Entries Specified in the PDB File

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