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2Z3B
Asym. Unit
Info
Asym.Unit (708 KB)
Biol.Unit 1 (700 KB)
Biol.Unit 2 (706 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACILLUS SUBTILIS CODW, A NON-CANONICAL HSLV-LIKE PEPTIDASE WITH AN IMPAIRED CATALYTIC APPARATUS
Authors
:
S. H. Rho, H. H. Park, G. B. Kang, Y. J. Lim, M. S. Kang, B. K. Lim, I. S. Seong, C. H. Chung, J. Wang, S. H. Eom
Date
:
03 Jun 07 (Deposition) - 25 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (2x)
Biol. Unit 2: G,H,I,J,K,L (2x)
Keywords
:
N-Terminal Nucleophile Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Rho, H. H. Park, G. B. Kang, Y. J. Im, M. S. Kang, B. K. Lim, I. S. Seong, J. Seol, C. H. Chung, J. Wang, S. H. Eom
Crystal Structure Of Bacillus Subtilis Codw, A Noncanonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus
Proteins V. 71 1020 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
1j: SODIUM ION (NAj)
1k: SODIUM ION (NAk)
1l: SODIUM ION (NAl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NA
12
Ligand/Ion
SODIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:164 , CYS A:167 , THR A:170
BINDING SITE FOR RESIDUE NA A 1001
02
AC2
SOFTWARE
GLY B:164 , CYS B:167 , THR B:170 , HOH B:1010
BINDING SITE FOR RESIDUE NA B 1002
03
AC3
SOFTWARE
GLY C:164 , CYS C:167 , THR C:170 , HOH C:1024
BINDING SITE FOR RESIDUE NA C 1003
04
AC4
SOFTWARE
GLY D:164 , CYS D:167 , THR D:170
BINDING SITE FOR RESIDUE NA D 1004
05
AC5
SOFTWARE
GLY E:164 , CYS E:167 , THR E:170
BINDING SITE FOR RESIDUE NA E 1005
06
AC6
SOFTWARE
GLY F:164 , CYS F:167 , THR F:170
BINDING SITE FOR RESIDUE NA F 1006
07
AC7
SOFTWARE
GLY G:164 , CYS G:167 , THR G:170
BINDING SITE FOR RESIDUE NA G 1007
08
AC8
SOFTWARE
GLY J:164 , CYS J:167 , THR J:170
BINDING SITE FOR RESIDUE NA J 1008
09
AC9
SOFTWARE
GLY I:164 , CYS I:167 , THR I:170
BINDING SITE FOR RESIDUE NA I 1009
10
BC1
SOFTWARE
GLY H:164 , CYS H:167
BINDING SITE FOR RESIDUE NA H 1010
11
BC2
SOFTWARE
GLY K:164 , CYS K:167
BINDING SITE FOR RESIDUE NA K 1011
12
BC3
SOFTWARE
GLY L:164 , CYS L:167 , THR L:170
BINDING SITE FOR RESIDUE NA L 1012
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (A:5-179,B:5-179,C:5-179,D:5-179,E:...)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
CLPQ_BACSU
6-180
12
A:5-179
B:5-179
C:5-179
D:5-179
E:5-179
F:5-179
G:5-179
H:5-179
I:5-179
J:5-179
K:5-179
L:5-179
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2z3ba_ (A:)
1b: SCOP_d2z3bb_ (B:)
1c: SCOP_d2z3bk_ (K:)
1d: SCOP_d2z3bl_ (L:)
1e: SCOP_d2z3bc_ (C:)
1f: SCOP_d2z3bd_ (D:)
1g: SCOP_d2z3be_ (E:)
1h: SCOP_d2z3bf_ (F:)
1i: SCOP_d2z3bg_ (G:)
1j: SCOP_d2z3bh_ (H:)
1k: SCOP_d2z3bi_ (I:)
1l: SCOP_d2z3bj_ (J:)
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)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d2z3ba_
A:
1b
d2z3bb_
B:
1c
d2z3bk_
K:
1d
d2z3bl_
L:
1e
d2z3bc_
C:
1f
d2z3bd_
D:
1g
d2z3be_
E:
1h
d2z3bf_
F:
1i
d2z3bg_
G:
1j
d2z3bh_
H:
1k
d2z3bi_
I:
1l
d2z3bj_
J:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2z3bA00 (A:1-180)
1b: CATH_2z3bB00 (B:1-180)
1c: CATH_2z3bK00 (K:1-180)
1d: CATH_2z3bL00 (L:1-180)
1e: CATH_2z3bC00 (C:1-180)
1f: CATH_2z3bD00 (D:1-180)
1g: CATH_2z3bE00 (E:1-180)
1h: CATH_2z3bF00 (F:1-180)
1i: CATH_2z3bG00 (G:1-180)
1j: CATH_2z3bH00 (H:1-180)
1k: CATH_2z3bI00 (I:1-180)
1l: CATH_2z3bJ00 (J:1-180)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Bacillus subtilis. Organism_taxid: 1423.
(2)
1a
2z3bA00
A:1-180
1b
2z3bB00
B:1-180
1c
2z3bK00
K:1-180
1d
2z3bL00
L:1-180
1e
2z3bC00
C:1-180
1f
2z3bD00
D:1-180
1g
2z3bE00
E:1-180
1h
2z3bF00
F:1-180
1i
2z3bG00
G:1-180
1j
2z3bH00
H:1-180
1k
2z3bI00
I:1-180
1l
2z3bJ00
J:1-180
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Proteasome_2z3bL01 (L:2-179)
1b: PFAM_Proteasome_2z3bL02 (L:2-179)
1c: PFAM_Proteasome_2z3bL03 (L:2-179)
1d: PFAM_Proteasome_2z3bL04 (L:2-179)
1e: PFAM_Proteasome_2z3bL05 (L:2-179)
1f: PFAM_Proteasome_2z3bL06 (L:2-179)
1g: PFAM_Proteasome_2z3bL07 (L:2-179)
1h: PFAM_Proteasome_2z3bL08 (L:2-179)
1i: PFAM_Proteasome_2z3bL09 (L:2-179)
1j: PFAM_Proteasome_2z3bL10 (L:2-179)
1k: PFAM_Proteasome_2z3bL11 (L:2-179)
1l: PFAM_Proteasome_2z3bL12 (L:2-179)
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Clans
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)
Organisms
(
)
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)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Bacillus subtilis
(3)
1a
Proteasome-2z3bL01
L:2-179
1b
Proteasome-2z3bL02
L:2-179
1c
Proteasome-2z3bL03
L:2-179
1d
Proteasome-2z3bL04
L:2-179
1e
Proteasome-2z3bL05
L:2-179
1f
Proteasome-2z3bL06
L:2-179
1g
Proteasome-2z3bL07
L:2-179
1h
Proteasome-2z3bL08
L:2-179
1i
Proteasome-2z3bL09
L:2-179
1j
Proteasome-2z3bL10
L:2-179
1k
Proteasome-2z3bL11
L:2-179
1l
Proteasome-2z3bL12
L:2-179
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