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2Z3B
Biol. Unit 1
Info
Asym.Unit (708 KB)
Biol.Unit 1 (700 KB)
Biol.Unit 2 (706 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACILLUS SUBTILIS CODW, A NON-CANONICAL HSLV-LIKE PEPTIDASE WITH AN IMPAIRED CATALYTIC APPARATUS
Authors
:
S. H. Rho, H. H. Park, G. B. Kang, Y. J. Lim, M. S. Kang, B. K. Lim, I. S. Seong, C. H. Chung, J. Wang, S. H. Eom
Date
:
03 Jun 07 (Deposition) - 25 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (2x)
Biol. Unit 2: G,H,I,J,K,L (2x)
Keywords
:
N-Terminal Nucleophile Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Rho, H. H. Park, G. B. Kang, Y. J. Im, M. S. Kang, B. K. Lim, I. S. Seong, J. Seol, C. H. Chung, J. Wang, S. H. Eom
Crystal Structure Of Bacillus Subtilis Codw, A Noncanonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus
Proteins V. 71 1020 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
1j: SODIUM ION (NAj)
1k: SODIUM ION (NAk)
1l: SODIUM ION (NAl)
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:164 , CYS A:167 , THR A:170
BINDING SITE FOR RESIDUE NA A 1001
2
AC2
SOFTWARE
GLY B:164 , CYS B:167 , THR B:170 , HOH B:1010
BINDING SITE FOR RESIDUE NA B 1002
3
AC3
SOFTWARE
GLY C:164 , CYS C:167 , THR C:170 , HOH C:1024
BINDING SITE FOR RESIDUE NA C 1003
4
AC4
SOFTWARE
GLY D:164 , CYS D:167 , THR D:170
BINDING SITE FOR RESIDUE NA D 1004
5
AC5
SOFTWARE
GLY E:164 , CYS E:167 , THR E:170
BINDING SITE FOR RESIDUE NA E 1005
6
AC6
SOFTWARE
GLY F:164 , CYS F:167 , THR F:170
BINDING SITE FOR RESIDUE NA F 1006
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (A:5-179,B:5-179,C:5-179,D:5-179,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
CLPQ_BACSU
6-180
12
A:5-179
B:5-179
C:5-179
D:5-179
E:5-179
F:5-179
-
-
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2z3ba_ (A:)
1b: SCOP_d2z3bb_ (B:)
1c: SCOP_d2z3bk_ (K:)
1d: SCOP_d2z3bl_ (L:)
1e: SCOP_d2z3bc_ (C:)
1f: SCOP_d2z3bd_ (D:)
1g: SCOP_d2z3be_ (E:)
1h: SCOP_d2z3bf_ (F:)
1i: SCOP_d2z3bg_ (G:)
1j: SCOP_d2z3bh_ (H:)
1k: SCOP_d2z3bi_ (I:)
1l: SCOP_d2z3bj_ (J:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d2z3ba_
A:
1b
d2z3bb_
B:
1c
d2z3bk_
K:
1d
d2z3bl_
L:
1e
d2z3bc_
C:
1f
d2z3bd_
D:
1g
d2z3be_
E:
1h
d2z3bf_
F:
1i
d2z3bg_
G:
1j
d2z3bh_
H:
1k
d2z3bi_
I:
1l
d2z3bj_
J:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2z3bA00 (A:1-180)
1b: CATH_2z3bB00 (B:1-180)
1c: CATH_2z3bK00 (K:1-180)
1d: CATH_2z3bL00 (L:1-180)
1e: CATH_2z3bC00 (C:1-180)
1f: CATH_2z3bD00 (D:1-180)
1g: CATH_2z3bE00 (E:1-180)
1h: CATH_2z3bF00 (F:1-180)
1i: CATH_2z3bG00 (G:1-180)
1j: CATH_2z3bH00 (H:1-180)
1k: CATH_2z3bI00 (I:1-180)
1l: CATH_2z3bJ00 (J:1-180)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Bacillus subtilis. Organism_taxid: 1423.
(2)
1a
2z3bA00
A:1-180
1b
2z3bB00
B:1-180
1c
2z3bK00
K:1-180
1d
2z3bL00
L:1-180
1e
2z3bC00
C:1-180
1f
2z3bD00
D:1-180
1g
2z3bE00
E:1-180
1h
2z3bF00
F:1-180
1i
2z3bG00
G:1-180
1j
2z3bH00
H:1-180
1k
2z3bI00
I:1-180
1l
2z3bJ00
J:1-180
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Proteasome_2z3bL01 (L:2-179)
1b: PFAM_Proteasome_2z3bL02 (L:2-179)
1c: PFAM_Proteasome_2z3bL03 (L:2-179)
1d: PFAM_Proteasome_2z3bL04 (L:2-179)
1e: PFAM_Proteasome_2z3bL05 (L:2-179)
1f: PFAM_Proteasome_2z3bL06 (L:2-179)
1g: PFAM_Proteasome_2z3bL07 (L:2-179)
1h: PFAM_Proteasome_2z3bL08 (L:2-179)
1i: PFAM_Proteasome_2z3bL09 (L:2-179)
1j: PFAM_Proteasome_2z3bL10 (L:2-179)
1k: PFAM_Proteasome_2z3bL11 (L:2-179)
1l: PFAM_Proteasome_2z3bL12 (L:2-179)
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(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Bacillus subtilis
(3)
1a
Proteasome-2z3bL01
L:2-179
1b
Proteasome-2z3bL02
L:2-179
1c
Proteasome-2z3bL03
L:2-179
1d
Proteasome-2z3bL04
L:2-179
1e
Proteasome-2z3bL05
L:2-179
1f
Proteasome-2z3bL06
L:2-179
1g
Proteasome-2z3bL07
L:2-179
1h
Proteasome-2z3bL08
L:2-179
1i
Proteasome-2z3bL09
L:2-179
1j
Proteasome-2z3bL10
L:2-179
1k
Proteasome-2z3bL11
L:2-179
1l
Proteasome-2z3bL12
L:2-179
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Show PDB file:
Asym.Unit (708 KB)
Header - Asym.Unit
Biol.Unit 1 (700 KB)
Header - Biol.Unit 1
Biol.Unit 2 (706 KB)
Header - Biol.Unit 2
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