2YW3 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE ANALYSIS OF THE 4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE FROM TTHB1

Authors :   Y. Kawano, K. Hashimoto, N. Kamiya, Riken Structural Genomics/Prot Initiative (Rsgi)

Date :   19 Apr 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.67

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Aldolase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kawano, K. Hashimoto, N. Kamiya
Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate Aldolase/2-Deydro-3-Deoxyphosphogluconate Aldolase From Tthb1
To Be Published
PubMed: search

Molecule 1 - 4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	4.1.2.14
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 17)

No.	Name	Count	Type	Full Name
1	PO4	17	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	PO4	5	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	PO4	12	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL D:148 , HOH D:2167 , ARG F:47 , GLY F:68 , THR F:69 , PRO F:90 , HOH F:2054 , HOH F:2084	BINDING SITE FOR RESIDUE PO4 F 1169
02	AC2	SOFTWARE	LEU D:18 , THR D:157 , GLY D:158 , GLY D:159 , GLY D:179 , SER D:180 , HOH D:2015 , HOH D:2020 , HOH D:2102 , HOH D:2147 , HOH E:2127 , HOH E:2128	BINDING SITE FOR RESIDUE PO4 D 2001
03	AC3	SOFTWARE	GLY D:185 , LEU D:187	BINDING SITE FOR RESIDUE PO4 D 2002
04	AC4	SOFTWARE	THR B:157 , GLY B:158 , GLY B:159 , GLY B:179 , SER B:180 , HOH B:2018 , HOH B:2021 , HOH B:2050 , HOH B:2058 , HOH B:2113	BINDING SITE FOR RESIDUE PO4 B 2003
05	AC5	SOFTWARE	THR E:20 , VAL E:21 , THR E:45 , LEU E:46 , ARG E:47 , THR E:48 , GLY E:51 , HOH E:2134	BINDING SITE FOR RESIDUE PO4 E 2004
06	AC6	SOFTWARE	LEU A:18 , THR A:157 , GLY A:158 , GLY A:159 , GLY A:179 , SER A:180 , HOH A:2006 , HOH A:2012 , HOH A:2032 , HOH A:2047 , HOH A:2128	BINDING SITE FOR RESIDUE PO4 A 2005
07	AC7	SOFTWARE	THR A:115 , GLU A:116 , ARG A:119 , THR B:115 , GLU B:116 , ARG B:119 , THR C:115 , GLU C:116 , ARG C:119	BINDING SITE FOR RESIDUE PO4 B 2006
08	AC8	SOFTWARE	THR F:20 , VAL F:21 , THR F:45 , LEU F:46 , ARG F:47 , THR F:48 , GLY F:51 , HOH F:2120	BINDING SITE FOR RESIDUE PO4 F 2007
09	AC9	SOFTWARE	THR D:115 , GLU D:116 , ARG D:119 , THR E:115 , GLU E:116 , ARG E:119 , GLU F:116 , ARG F:119	BINDING SITE FOR RESIDUE PO4 F 2008
10	BC1	SOFTWARE	HOH D:2138 , THR F:157 , GLY F:158 , GLY F:159 , GLY F:179 , SER F:180 , HOH F:2013 , HOH F:2018 , HOH F:2063 , HOH F:2067 , HOH F:2131	BINDING SITE FOR RESIDUE PO4 F 2009
11	BC2	SOFTWARE	LEU E:18 , THR E:157 , GLY E:158 , GLY E:159 , GLY E:179 , SER E:180 , PO4 E:2014 , HOH E:2018 , HOH E:2075 , HOH E:2147 , HOH E:2158 , HOH F:2177	BINDING SITE FOR RESIDUE PO4 E 2010
12	BC3	SOFTWARE	THR D:20 , VAL D:21 , THR D:45 , LEU D:46 , ARG D:47 , THR D:48 , GLY D:51 , HOH D:2186	BINDING SITE FOR RESIDUE PO4 D 2011
13	BC4	SOFTWARE	THR D:45 , ARG D:47 , GLY D:68 , THR D:69 , PRO D:90 , HOH D:2067 , HOH D:2122 , HOH D:2150 , HOH D:2179 , VAL E:148	BINDING SITE FOR RESIDUE PO4 D 2012
14	BC5	SOFTWARE	THR E:45 , ARG E:47 , GLY E:68 , THR E:69 , PO4 E:2014 , HOH E:2049 , HOH E:2125 , VAL F:148 , HOH F:2147	BINDING SITE FOR RESIDUE PO4 E 2013
15	BC6	SOFTWARE	LEU E:18 , LYS E:129 , PHE E:131 , THR E:157 , PO4 E:2010 , PO4 E:2013 , HOH E:2121 , HOH E:2125 , HOH E:2158 , HOH E:2174 , VAL F:148	BINDING SITE FOR RESIDUE PO4 E 2014
16	BC7	SOFTWARE	GLU A:188 , GLU B:134 , VAL B:139 , HIS B:164 , HIS B:167 , HOH B:2033 , HOH B:2109	BINDING SITE FOR RESIDUE PO4 B 2015
17	BC8	SOFTWARE	THR C:157 , GLY C:158 , GLY C:159 , GLY C:179 , SER C:180 , HOH C:2018 , HOH C:2023 , HOH C:2059 , HOH C:2076 , HOH C:2129	BINDING SITE FOR RESIDUE PO4 C 2016

(no "SS Bond" information available for 2YW3)

Asymmetric Unit

No.	Residues
1	Phe A:131	-	Pro A:132
2	Phe B:131	-	Pro B:132
3	Phe C:131	-	Pro C:132
4	Phe D:131	-	Pro D:132
5	Phe E:131	-	Pro E:132
6	Phe F:131	-	Pro F:132

(no "SAP(SNP)/Variant" information available for 2YW3)

(no "PROSITE Motif" information available for 2YW3)

(no "Exon" information available for 2YW3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:195
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:195
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196     
         Q53W90_THET8     7 LAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALL 201
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3A00 A:7-201 Aldolase class I                                                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhheeeee......hhhhhhhhhhhh...eeeee...hhhhhhhhhhh....eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 A   7 LAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALL 201
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:197
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       
         Q53W90_THET8     6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3B00 B:6-202 Aldolase class I                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhheeeee......hhhhhhhhhhhh...eeeee...hhhhhhhhhhh....eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 B   6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195

Chain C from PDB  Type:PROTEIN  Length:197
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:197
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       
         Q53W90_THET8     6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3C00 C:6-202 Aldolase class I                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhheeeee......hhhhhhhhhhhh...eeeee...hhhhhhhhhhh....eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 C   6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195

Chain D from PDB  Type:PROTEIN  Length:199
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:199
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192         
         Q53W90_THET8     3 GMDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALL 201
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3D00 D:3-201 Aldolase class I                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhheeeee......hhhhhhhhhhhh...eeee...hhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 D   3 GMDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALL 201
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain E from PDB  Type:PROTEIN  Length:200
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
         Q53W90_THET8     3 GMDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3E00 E:3-202 Aldolase class I                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhheeeee......hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 E   3 GMDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain F from PDB  Type:PROTEIN  Length:199
 aligned with Q53W90_THET8 | Q53W90 from UniProtKB/TrEMBL  Length:207

    Alignment length:199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193         
         Q53W90_THET8     4 MDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2yw3F00 F:4-202 Aldolase class I                                                                                                                                                                        CATH domains
           Pfam domains (1) ---Aldolase-2yw3F01 F:7-195                                                                                                                                                                     ------- Pfam domains (1)
           Pfam domains (2) ---Aldolase-2yw3F02 F:7-195                                                                                                                                                                     ------- Pfam domains (2)
           Pfam domains (3) ---Aldolase-2yw3F03 F:7-195                                                                                                                                                                     ------- Pfam domains (3)
           Pfam domains (4) ---Aldolase-2yw3F04 F:7-195                                                                                                                                                                     ------- Pfam domains (4)
           Pfam domains (5) ---Aldolase-2yw3F05 F:7-195                                                                                                                                                                     ------- Pfam domains (5)
           Pfam domains (6) ---Aldolase-2yw3F06 F:7-195                                                                                                                                                                     ------- Pfam domains (6)
         Sec.struct. author ...hhhhhhhheeeee......hhhhhhhhhhhh...eeee...hhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeee...hhhhhhhhhhhh..eeeee.hhhhhhhhhhh...eeee......hhhhhhhhhhhhh...eeee....hhhhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yw3 F   4 MDPLAVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLS 202
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2YW3)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. (6)

1a	2yw3E00	E:3-202
1b	2yw3D00	D:3-201
1c	2yw3F00	F:4-202
1d	2yw3B00	B:6-202
1e	2yw3C00	C:6-202
1f	2yw3A00	A:7-201

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: Aldolase (10)

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (2)

1a	Aldolase-2yw3F01	F:7-195
1b	Aldolase-2yw3F02	F:7-195
1c	Aldolase-2yw3F03	F:7-195
1d	Aldolase-2yw3F04	F:7-195
1e	Aldolase-2yw3F05	F:7-195
1f	Aldolase-2yw3F06	F:7-195

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q53W90_THET8 | Q53W90)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
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	Cis Peptide Bonds
		Phe A:131 - Pro A:132	[ RasMol ]
		Phe B:131 - Pro B:132	[ RasMol ]
		Phe C:131 - Pro C:132	[ RasMol ]
		Phe D:131 - Pro D:132	[ RasMol ]
		Phe E:131 - Pro E:132	[ RasMol ]
		Phe F:131 - Pro F:132	[ RasMol ]

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	2yw3
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	Q53W90_THET8 \| Q53W90
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	Q53W90_THET8 \| Q53W90	:	2yw4

2yw4	THE SAME PROTEIN RELATED ID: TTK003002241.1 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 17)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (3, 3)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File