2YW3 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE ANALYSIS OF THE 4-HYDROXY-2-OXOGLUTARATE A DEYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE FROM TTHB1
• Keywords: ALDOLASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON P STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2YW3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	A	195	1447	0
2	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	B	197	1460	0
3	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	C	197	1463	0
4	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	D	199	1477	0
5	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	E	200	1482	0
6	Protein	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	F	199	1479	0
7	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	A	1	0	5
8	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	B	3	0	15
9	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	C	1	0	5
10	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	D	4	0	20
11	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	E	4	0	20
12	Ligand	4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	F	4	0	19
13	Water			1023	0	1023
total				2227	8808	1107

Proteins

Unit 1	LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201
Unit 2	PRO 6 LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201 SER 202
Unit 3	PRO 6 LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201 SER 202
Unit 4	GLY 3 MET 4 ASP 5 PRO 6 LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201
Unit 5	GLY 3 MET 4 ASP 5 PRO 6 LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201 SER 202
Unit 6	MET 4 ASP 5 PRO 6 LEU 7 ALA 8 VAL 9 LEU 10 ALA 11 GLU 12 SER 13 ARG 14 LEU 15 LEU 16 PRO 17 LEU 18 LEU 19 THR 20 VAL 21 ARG 22 GLY 23 GLY 24 GLU 25 ASP 26 LEU 27 LEU 28 GLY 29 LEU 30 ALA 31 ARG 32 VAL 33 LEU 34 GLU 35 GLU 36 GLU 37 GLY 38 VAL 39 GLY 40 ALA 41 LEU 42 GLU 43 ILE 44 THR 45 LEU 46 ARG 47 THR 48 GLU 49 LYS 50 GLY 51 LEU 52 GLU 53 ALA 54 LEU 55 LYS 56 ALA 57 LEU 58 ARG 59 LYS 60 SER 61 GLY 62 LEU 63 LEU 64 LEU 65 GLY 66 ALA 67 GLY 68 THR 69 VAL 70 ARG 71 SER 72 PRO 73 LYS 74 GLU 75 ALA 76 GLU 77 ALA 78 ALA 79 LEU 80 GLU 81 ALA 82 GLY 83 ALA 84 ALA 85 PHE 86 LEU 87 VAL 88 SER 89 PRO 90 GLY 91 LEU 92 LEU 93 GLU 94 GLU 95 VAL 96 ALA 97 ALA 98 LEU 99 ALA 100 GLN 101 ALA 102 ARG 103 GLY 104 VAL 105 PRO 106 TYR 107 LEU 108 PRO 109 GLY 110 VAL 111 LEU 112 THR 113 PRO 114 THR 115 GLU 116 VAL 117 GLU 118 ARG 119 ALA 120 LEU 121 ALA 122 LEU 123 GLY 124 LEU 125 SER 126 ALA 127 LEU 128 LYS 129 PHE 130 PHE 131 PRO 132 ALA 133 GLU 134 PRO 135 PHE 136 GLN 137 GLY 138 VAL 139 ARG 140 VAL 141 LEU 142 ARG 143 ALA 144 TYR 145 ALA 146 GLU 147 VAL 148 PHE 149 PRO 150 GLU 151 VAL 152 ARG 153 PHE 154 LEU 155 PRO 156 THR 157 GLY 158 GLY 159 ILE 160 LYS 161 GLU 162 GLU 163 HIS 164 LEU 165 PRO 166 HIS 167 TYR 168 ALA 169 ALA 170 LEU 171 PRO 172 ASN 173 LEU 174 LEU 175 ALA 176 VAL 177 GLY 178 GLY 179 SER 180 TRP 181 LEU 182 LEU 183 GLN 184 GLY 185 ASN 186 LEU 187 GLU 188 ALA 189 VAL 190 ARG 191 ALA 192 LYS 193 VAL 194 ARG 195 ALA 196 ALA 197 LYS 198 ALA 199 LEU 200 LEU 201 SER 202

Ligands

Unit 7	PO4 2005
Unit 8	PO4 2003 PO4 2006 PO4 2015
Unit 9	PO4 2016
Unit 10	PO4 2001 PO4 2002 PO4 2011 PO4 2012
Unit 11	PO4 2004 PO4 2010 PO4 2013 PO4 2014
Unit 12	PO4 1169 PO4 2007 PO4 2008 PO4 2009