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2YW3
Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (108 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE 4-HYDROXY-2-OXOGLUTARATE ALDOLASE/2-DEYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE FROM TTHB1
Authors
:
Y. Kawano, K. Hashimoto, N. Kamiya, Riken Structural Genomics/Prot Initiative (Rsgi)
Date
:
19 Apr 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Aldolase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kawano, K. Hashimoto, N. Kamiya
Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate Aldolase/2-Deydro-3-Deoxyphosphogluconate Aldolase From Tthb1
To Be Published
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Hetero Components
(1, 17)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
1l: PHOSPHATE ION (PO4l)
1m: PHOSPHATE ION (PO4m)
1n: PHOSPHATE ION (PO4n)
1o: PHOSPHATE ION (PO4o)
1p: PHOSPHATE ION (PO4p)
1q: PHOSPHATE ION (PO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
17
Ligand/Ion
PHOSPHATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL D:148 , HOH D:2167 , ARG F:47 , GLY F:68 , THR F:69 , PRO F:90 , HOH F:2054 , HOH F:2084
BINDING SITE FOR RESIDUE PO4 F 1169
02
AC2
SOFTWARE
LEU D:18 , THR D:157 , GLY D:158 , GLY D:159 , GLY D:179 , SER D:180 , HOH D:2015 , HOH D:2020 , HOH D:2102 , HOH D:2147 , HOH E:2127 , HOH E:2128
BINDING SITE FOR RESIDUE PO4 D 2001
03
AC3
SOFTWARE
GLY D:185 , LEU D:187
BINDING SITE FOR RESIDUE PO4 D 2002
04
AC4
SOFTWARE
THR B:157 , GLY B:158 , GLY B:159 , GLY B:179 , SER B:180 , HOH B:2018 , HOH B:2021 , HOH B:2050 , HOH B:2058 , HOH B:2113
BINDING SITE FOR RESIDUE PO4 B 2003
05
AC5
SOFTWARE
THR E:20 , VAL E:21 , THR E:45 , LEU E:46 , ARG E:47 , THR E:48 , GLY E:51 , HOH E:2134
BINDING SITE FOR RESIDUE PO4 E 2004
06
AC6
SOFTWARE
LEU A:18 , THR A:157 , GLY A:158 , GLY A:159 , GLY A:179 , SER A:180 , HOH A:2006 , HOH A:2012 , HOH A:2032 , HOH A:2047 , HOH A:2128
BINDING SITE FOR RESIDUE PO4 A 2005
07
AC7
SOFTWARE
THR A:115 , GLU A:116 , ARG A:119 , THR B:115 , GLU B:116 , ARG B:119 , THR C:115 , GLU C:116 , ARG C:119
BINDING SITE FOR RESIDUE PO4 B 2006
08
AC8
SOFTWARE
THR F:20 , VAL F:21 , THR F:45 , LEU F:46 , ARG F:47 , THR F:48 , GLY F:51 , HOH F:2120
BINDING SITE FOR RESIDUE PO4 F 2007
09
AC9
SOFTWARE
THR D:115 , GLU D:116 , ARG D:119 , THR E:115 , GLU E:116 , ARG E:119 , GLU F:116 , ARG F:119
BINDING SITE FOR RESIDUE PO4 F 2008
10
BC1
SOFTWARE
HOH D:2138 , THR F:157 , GLY F:158 , GLY F:159 , GLY F:179 , SER F:180 , HOH F:2013 , HOH F:2018 , HOH F:2063 , HOH F:2067 , HOH F:2131
BINDING SITE FOR RESIDUE PO4 F 2009
11
BC2
SOFTWARE
LEU E:18 , THR E:157 , GLY E:158 , GLY E:159 , GLY E:179 , SER E:180 , PO4 E:2014 , HOH E:2018 , HOH E:2075 , HOH E:2147 , HOH E:2158 , HOH F:2177
BINDING SITE FOR RESIDUE PO4 E 2010
12
BC3
SOFTWARE
THR D:20 , VAL D:21 , THR D:45 , LEU D:46 , ARG D:47 , THR D:48 , GLY D:51 , HOH D:2186
BINDING SITE FOR RESIDUE PO4 D 2011
13
BC4
SOFTWARE
THR D:45 , ARG D:47 , GLY D:68 , THR D:69 , PRO D:90 , HOH D:2067 , HOH D:2122 , HOH D:2150 , HOH D:2179 , VAL E:148
BINDING SITE FOR RESIDUE PO4 D 2012
14
BC5
SOFTWARE
THR E:45 , ARG E:47 , GLY E:68 , THR E:69 , PO4 E:2014 , HOH E:2049 , HOH E:2125 , VAL F:148 , HOH F:2147
BINDING SITE FOR RESIDUE PO4 E 2013
15
BC6
SOFTWARE
LEU E:18 , LYS E:129 , PHE E:131 , THR E:157 , PO4 E:2010 , PO4 E:2013 , HOH E:2121 , HOH E:2125 , HOH E:2158 , HOH E:2174 , VAL F:148
BINDING SITE FOR RESIDUE PO4 E 2014
16
BC7
SOFTWARE
GLU A:188 , GLU B:134 , VAL B:139 , HIS B:164 , HIS B:167 , HOH B:2033 , HOH B:2109
BINDING SITE FOR RESIDUE PO4 B 2015
17
BC8
SOFTWARE
THR C:157 , GLY C:158 , GLY C:159 , GLY C:179 , SER C:180 , HOH C:2018 , HOH C:2023 , HOH C:2059 , HOH C:2076 , HOH C:2129
BINDING SITE FOR RESIDUE PO4 C 2016
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2yw3E00 (E:3-202)
1b: CATH_2yw3D00 (D:3-201)
1c: CATH_2yw3F00 (F:4-202)
1d: CATH_2yw3B00 (B:6-202)
1e: CATH_2yw3C00 (C:6-202)
1f: CATH_2yw3A00 (A:7-201)
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(
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(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(6)
1a
2yw3E00
E:3-202
1b
2yw3D00
D:3-201
1c
2yw3F00
F:4-202
1d
2yw3B00
B:6-202
1e
2yw3C00
C:6-202
1f
2yw3A00
A:7-201
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Aldolase_2yw3F01 (F:7-195)
1b: PFAM_Aldolase_2yw3F02 (F:7-195)
1c: PFAM_Aldolase_2yw3F03 (F:7-195)
1d: PFAM_Aldolase_2yw3F04 (F:7-195)
1e: PFAM_Aldolase_2yw3F05 (F:7-195)
1f: PFAM_Aldolase_2yw3F06 (F:7-195)
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(
)
Clan
:
TIM_barrel
(694)
Family
:
Aldolase
(10)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Aldolase-2yw3F01
F:7-195
1b
Aldolase-2yw3F02
F:7-195
1c
Aldolase-2yw3F03
F:7-195
1d
Aldolase-2yw3F04
F:7-195
1e
Aldolase-2yw3F05
F:7-195
1f
Aldolase-2yw3F06
F:7-195
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