2YU8 - JenaLib

Title :   SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 648-680) OF HUMAN ZINC FINGER PROTEIN 347

Authors :   N. Tochio, T. Tomizawa, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   06 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Zf-C2H2, Nmr, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Tochio, T. Tomizawa, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama
Solution Structure Of The C2H2 Type Zinc Finger (Region 648-680) Of Human Zinc Finger Protein 347
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (1, 1)

NMR Structure (1, 1)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000334197	2a	ENSE00001733228	chr19:53657052-53656986	67	ZN347_HUMAN	1-5	5	0	-	-
1.3	ENST00000334197	3	ENSE00001705088	chr19:53652620-53652494	127	ZN347_HUMAN	6-48	43	0	-	-
1.4b	ENST00000334197	4b	ENSE00001298405	chr19:53652062-53651934	129	ZN347_HUMAN	48-91	44	0	-	-
1.5b	ENST00000334197	5b	ENSE00001425913	chr19:53645809-53642648	3162	ZN347_HUMAN	91-839	749	1	A:1-46 (gaps)	85

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ZN347_HUMAN | Q96SE7 from UniProtKB/Swiss-Prot  Length:839

    Alignment length:85
                                   630       640       650       660       670       680       690       700     
          ZN347_HUMAN   621 GEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTG 705
               SCOP domains ---------------------------d2yu8a1 A:8-35              ------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------zf-H2C2_2-2yu8------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------zf-H2C2_2-2yu8------------------------- Pfam domains (2)
         Sec.struct. author ..------------....--------......ee......ee..hhhhhhhhhhhhh...----------....---------.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -- PROSITE
               Transcript 1 Exon 1.5b  PDB: A:1-46 (gaps) UniProt: 91-839 [INCOMPLETE]                            Transcript 1
                 2yu8 A   1 GS------------SGSS--------GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP----------SGPS---------SG  46
                             |       -    |  | -      | 10        20        30        40         -|  |     -   | 
                             2            3  6        7                               40         41 44        45

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (7, 7)

NMR Structure(hide GO term definitions)

Chain A (ZN347_HUMAN | Q96SE7)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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