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(-) Description

Title :  SOLUTION STRUCTURE OF THE 9TH C2H2 TYPE ZINC FINGER DOMAIN OF ZINC FINGER PROTEIN 347
 
Authors :  W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  30 Mar 07  (Deposition) - 02 Oct 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  C2H2, Zinc Finger Domain, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The 9Th C2H2 Type Zinc Finger Domain Of Zinc Finger Protein 347
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER PROTEIN 347
    ChainsA
    EngineeredYES
    Expression System PlasmidP070115-14
    Expression System Vector TypePLASMID
    FragmentZINC FINGER DOMAIN
    GeneZNF347, ZNF1111
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymZINC FINGER PROTEIN 1111

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (0, 0)

(no "Site" information available for 2EQ1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EQ1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EQ1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EQ1)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_FINGER_C2H2_1PS00028 Zinc finger C2H2 type domain signature.ZN347_HUMAN291-311
319-339
347-367
375-395
403-423
431-451
459-479
487-507
515-535
543-563
571-591
599-619
655-675
683-703
711-731
739-759
767-787
  2-
-
-
-
-
-
-
A:487-507
-
A:516-517
-
-
-
-
-
-
-

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003341972aENSE00001733228chr19:53657052-5365698667ZN347_HUMAN1-550--
1.3ENST000003341973ENSE00001705088chr19:53652620-53652494127ZN347_HUMAN6-48430--
1.4bENST000003341974bENSE00001298405chr19:53652062-53651934129ZN347_HUMAN48-91440--
1.5bENST000003341975bENSE00001425913chr19:53645809-536426483162ZN347_HUMAN91-8397491A:473-518 (gaps)127

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ZN347_HUMAN | Q96SE7 from UniProtKB/Swiss-Prot  Length:839

    Alignment length:127
                                   448       458       468       478       488       498       508       518       528       538       548       558       
          ZN347_HUMAN   439 GVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 565
               SCOP domains -----------------------------------------d2eq1a1 A:480-507           ---------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....--------..--------------------------................hhhhhhhhhh.......-----------------------..--.-------------..---------. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZINC_FINGER_C-------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -- PROSITE
               Transcript 1 Exon 1.5b  PDB: A:473-518 (gaps) UniProt: 91-839 [INCOMPLETE]                                                                   Transcript 1
                 2eq1 A 473 GSSGS--------SG--------------------------TGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-----------------------SG--P-------------SS---------G 518
                                |    -   ||    -         -         - |     488       498       508   |     -         -       ||- |       -     ||  -      |
                              477      478|                        480                             512                     513|  |           516|       518
                                        479                                                                                 514  |            517          
                                                                                                                               515                         

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EQ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EQ1)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (ZN347_HUMAN | Q96SE7)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZN347_HUMAN | Q96SE72ema 2emp 2en4 2ene 2enf 2eoe 2eow 2eq0 2eq2 2eq3 2yti 2ytk 2ytn 2ytr 2yu8

(-) Related Entries Specified in the PDB File

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