2YTH - JenaLib

Title :   SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 479-511) OF HUMAN ZINC FINGER PROTEIN 224

Authors :   T. Tomizawa, N. Tochio, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   05 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Zf-C2H2, Nmr, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Tochio, T. Tomizawa, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama
Solution Structure Of The C2H2 Type Zinc Finger (Region 479-511) Of Human Zinc Finger Protein 224
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - ZINC FINGER PROTEIN 224
	Chains	:	A
	Engineered	:	YES
	Expression System Plasmid	:	P061225-42
	Expression System Vector Type	:	PLASMID
	Fragment	:	ZF-C2H2, UNP RESIDUES 479-511
	Gene	:	ZNF224
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS
	Synonym	:	ZINC FINGER PROTEIN 27, ZINC FINGER PROTEIN 233, ZINC FINGER PROTEIN 255, BONE MARROW ZINC FINGER 2, BMZF-2, ZINC FINGER PROTEIN KOX22

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ZN224_HUMAN | Q9NZL3 from UniProtKB/Swiss-Prot  Length:707

    Alignment length:103
                                   471       481       491       501       511       521       531       541       551       561   
          ZN224_HUMAN   462 GKSFSRAPCLLKHERLHSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPYNCKECGKSFGWASCLLKHQRLHSG 564
               SCOP domains -----------------d2ytha1 A:8-35              ---------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------zf-H2C2_2-2yth----------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------zf-H2C2_2-2yth----------------------------------------------------- Pfam domains (2)
         Sec.struct. author .......----------................hhhhhhhhhhhhh....-----------------------..--..----------------------.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------D---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZINC_FINGER_C2H2_-------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2yth A   1 GSSGSSG----------SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-----------------------SG--PS----------------------SG  46
                                  |  -       |10        20        30        40         -         -   ||  ||-         -         - | 
                                  7          8                              40                      41| 43|                     45 
                                                                                                     42  44

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (12, 12)

NMR Structure(hide GO term definitions)

Chain A (ZN224_HUMAN | Q9NZL3)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0031965	nuclear membrane	Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0017053	transcriptional repressor complex	A protein complex that possesses activity that prevents or downregulates transcription.

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