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(-) Description

Title :  STRUCTURE OF THE MATRIX PROTEIN FROM HUMAN RESPIRATORY SYNCYTIAL VIRUS
 
Authors :  H. K. Mcphee, J. L. Carlisle, A. Beeby, V. A. Money, S. M. D. Watson, R. P. Y J. M. Sanderson
Date :  26 May 11  (Deposition) - 08 Jun 11  (Release) - 08 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Viral Matrix Protein, Peripheral Membrane Protein, Virion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. K. Mcphee, J. L. Carlisle, A. Beeby, V. A. Money, S. M. D. Watson, R. P. Yeo, J. M. Sanderson
Influence Of Lipids On The Interfacial Disposition Of Respiratory Syncytical Virus Matrix Protein.
Langmuir V. 27 304 2011
PubMed-ID: 21141948  |  Reference-DOI: 10.1021/LA104041N

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PM254M
    Expression System Strain: BL21 (CODON PLUS)
    Expression System Taxid: 511693
    Expression System Vector: PET16A
    Expression System Vector Type: PLASMID
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS
    Organism Taxid: 11250
    Strain: A2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:85 , ALA A:86 , MET A:88 , SER A:90BINDING SITE FOR RESIDUE ACT A1260
2AC2SOFTWAREILE A:198 , TRP A:246BINDING SITE FOR RESIDUE ACT A1261

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YKD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:104 -Lys A:105

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YKD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YKD)

(-) Exons   (0, 0)

(no "Exon" information available for 2YKD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
 aligned with MATRX_HRSS2 | P0DOE6 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:256
                             1                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
          MATRX_HRSS2     - -METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Pneumo_matrix-2ykdA01 A:5-256                                                                                                                                                                                                                               --- Pfam domains
         Sec.struct. author ..eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeeeee..eeeeeeeee..hhhhhhh..eeeeehhhhh..-........eeeeeeeeeeeee.hhh.eeehhhhh.......eeeeeeeeeee.....eeeeeeeeeee..hhhhhhh.....hhhhhhhhhh.eee.....eeeee....hhhhh......eeeee.hhhh...hhhhhhhheeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ykd A   4 EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDD-SKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 259
                                    13        23        33        43        53        63        73        83        93        |-|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
                                                                                                                            102 |                                                                                                                                                           
                                                                                                                              104                                                                                                                                                           


Chain A from PDB  Type:PROTEIN  Length:255
 aligned with MATRX_HRSVA | P0DOE7 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:256
                             1                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
          MATRX_HRSVA     - -METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Pneumo_matrix-2ykdA01 A:5-256                                                                                                                                                                                                                               --- Pfam domains
         Sec.struct. author ..eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeeeee..eeeeeeeee..hhhhhhh..eeeeehhhhh..-........eeeeeeeeeeeee.hhh.eeehhhhh.......eeeeeeeeeee.....eeeeeeeeeee..hhhhhhh.....hhhhhhhhhh.eee.....eeeee....hhhhh......eeeee.hhhh...hhhhhhhheeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ykd A   4 EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDD-SKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 259
                                    13        23        33        43        53        63        73        83        93        |-|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
                                                                                                                            102 |                                                                                                                                                           
                                                                                                                              104
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YKD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YKD)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Pneumo_matrix] (2)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MATRX_HRSS2 | P0DOE6)

Chain A   (MATRX_HRSVA | P0DOE7)

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  2ykd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_HRSS2 | P0DOE6: 2vqp 4d4t 4v23
        MATRX_HRSVA | P0DOE7: 2vqp 4d4t 4v23

(-) Related Entries Specified in the PDB File

2vqp STRUCTURE OF THE MATRIX PROTEIN FROM HUMAN RESPIRATORY SYNCYTIAL VIRUS