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(-) Description

Title :  STRUCTURE OF THE MATRIX PROTEIN FROM HUMAN RESPIRATORY SYNCYTIAL VIRUS
 
Authors :  V. A. Money, H. K. Mcphee, J. M. Sanderson, R. P. Yeo
Date :  18 Mar 08  (Deposition) - 17 Feb 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Viral Matrix Protein, Peripheral Membrane Protein, Rsv, Virion, Matrix Protein, Envelope Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Money, H. K. Mcphee, J. A. Mosely, J. M. Sanderson, R. P. Yeo
Surface Features Of A Mononegavirales Matrix Protein Indicate Sites Of Membrane Interaction.
Proc. Natl. Acad. Sci. Usa V. 106 4441 2009
PubMed-ID: 19251668  |  Reference-DOI: 10.1073/PNAS.0805740106

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM254R
    Expression System Strain: BL21 (CODON PLUS)
    Expression System Taxid: 511693
    Expression System Vector: PET16A
    Mutation: YES
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS
    Organism Taxid: 11259
    Strain: A2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2FMT7Ligand/IonFORMIC ACID
3GOL2Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:194 , PRO A:196 , VAL A:238 , THR A:239 , TRP A:242 , HOH A:2176BINDING SITE FOR RESIDUE GOL A1256
02AC2SOFTWARETHR A:128 , TYR A:197 , LEU A:201 , HOH A:2177 , HOH A:2178 , HOH A:2179BINDING SITE FOR RESIDUE GOL A1257
03AC3SOFTWAREVAL A:153 , SER A:168 , ASN A:241BINDING SITE FOR RESIDUE FMT A1258
04AC4SOFTWARESER A:198 , ASP A:225BINDING SITE FOR RESIDUE FMT A1259
05AC5SOFTWARELYS A:7 , GLU A:10 , ASN A:187 , FMT A:1262BINDING SITE FOR RESIDUE FMT A1260
06AC6SOFTWARESER A:42 , ASN A:171 , ASN A:175 , HOH A:2181BINDING SITE FOR RESIDUE FMT A1261
07AC7SOFTWARELEU A:8 , THR A:183 , ASN A:187 , FMT A:1260 , HOH A:2182BINDING SITE FOR RESIDUE FMT A1262
08AC8SOFTWAREHIS A:9 , LYS A:121 , SER A:122 , MET A:125 , HOH A:2010 , HOH A:2090BINDING SITE FOR RESIDUE FMT A1263
09AC9SOFTWAREALA A:82 , VAL A:153 , ASN A:171 , LEU A:174 , HOH A:2113BINDING SITE FOR RESIDUE FMT A1264
10BC1SOFTWARELEU A:58 , VAL A:59 , LYS A:60 , ARG A:71 , THR A:107 , HOH A:2055 , HOH A:2184BINDING SITE FOR RESIDUE ACT A1265
11BC2SOFTWARETHR A:239 , THR A:240 , TRP A:242 , HOH A:2185BINDING SITE FOR RESIDUE ACT A1266
12BC3SOFTWARELEU A:81 , MET A:84 , SER A:86 , PRO A:253 , HOH A:2068 , HOH A:2186BINDING SITE FOR RESIDUE ACT A1267

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VQP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VQP)

(-) Exons   (0, 0)

(no "Exon" information available for 2VQP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
 aligned with MATRX_HRSS2 | P0DOE6 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:256
                             1                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
          MATRX_HRSS2     - -METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Pneumo_matrix-2vqpA01 A:1-252                                                                                                                                                                                                                               --- Pfam domains
         Sec.struct. author ..eeeeee......eeeeeeeeeee...................hhhhhhhhhh..eeeeeeeee..eeeeeeeee..hhhhhhh..eeeeehhhhh..-........eeeeeeeeeeeee.hhh.eeehhhhh.......eeeeeeeeeee.....eeeeeeeeeee..hhhhhh......hhhhhhhhhh.eee.....eeeee....hhhhh......eeeee.hhhh...hhhhhhhheeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vqp A   0 EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDD-SKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPRE 255
                                     9        19        29        39        49        59        69        79        89        |-|      109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
                                                                                                                             98 |                                                                                                                                                           
                                                                                                                              100                                                                                                                                                           


Chain A from PDB  Type:PROTEIN  Length:255
 aligned with MATRX_HRSVA | P0DOE7 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:256
                             1                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
          MATRX_HRSVA     - -METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Pneumo_matrix-2vqpA01 A:1-252                                                                                                                                                                                                                               --- Pfam domains
         Sec.struct. author ..eeeeee......eeeeeeeeeee...................hhhhhhhhhh..eeeeeeeee..eeeeeeeee..hhhhhhh..eeeeehhhhh..-........eeeeeeeeeeeee.hhh.eeehhhhh.......eeeeeeeeeee.....eeeeeeeeeee..hhhhhh......hhhhhhhhhh.eee.....eeeee....hhhhh......eeeee.hhhh...hhhhhhhheeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vqp A   0 EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDD-SKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPRE 255
                                     9        19        29        39        49        59        69        79        89        |-|      109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      
                                                                                                                             98 |                                                                                                                                                           
                                                                                                                              100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VQP)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Pneumo_matrix] (2)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MATRX_HRSS2 | P0DOE6)

Chain A   (MATRX_HRSVA | P0DOE7)

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  2vqp
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  MATRX_HRSVA | P0DOE7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_HRSS2 | P0DOE6: 2ykd 4d4t 4v23
        MATRX_HRSVA | P0DOE7: 2ykd 4d4t 4v23

(-) Related Entries Specified in the PDB File

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