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(-) Description

Title :  RSV MATRIX PROTEIN
 
Authors :  A. Forster, G. Maertens, M. Bajorek
Date :  31 Oct 14  (Deposition) - 04 Mar 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Forster, G. N. Maertens, P. J. Farrell, M. Bajorek
Dimerization Of Matrix Protein Is Required For Budding Of Respiratory Syncytial Virus.
J. Virol. V. 89 4624 2015
PubMed-ID: 25673702  |  Reference-DOI: 10.1128/JVI.03500-14

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Expression System Vector: PCDF-DUET1
    Organism Common: RSV
    Organism Scientific: RESPIRATORY SYNCYTIAL VIRUS
    Organism Taxid: 12814
    Strain: A2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K1Ligand/IonPOTASSIUM ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:61 , PRO A:68 , ASN A:93 , LEU A:96 , LYS A:101 , LEU A:102 , TYR A:104 , TYR A:229 , HOH A:2058 , HOH A:2064BINDING SITE FOR RESIDUE GOL A1255
2AC2SOFTWAREASN A:93 , VAL A:94 , LEU A:96 , LEU A:230 , GLU A:231 , GLU A:233 , HOH A:2059BINDING SITE FOR RESIDUE K A1256
3AC3SOFTWARELYS A:193 , ILE A:194 , HIS A:244 , HOH A:2114BINDING SITE FOR RESIDUE SO4 A1257

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D4T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D4T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D4T)

(-) Exons   (0, 0)

(no "Exon" information available for 4D4T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeeeee..eeeeeeeee..hhhhh....eeeeehhhhh..........eeeeeeeeeeeeee.hhh.eeehhhhhh......eeeeeeeeeee....eeeeeeeeeeee.....hhhhhhhhhh.eee.....eeeeee...hhhhh.....eeeeee.hhhhh..hhhhhhhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d4t A  -1 EFMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVNITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPM 254
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168||     187       197       207       217       227       237       247       
                                                                                                                                                                                                    169|                                                                           
                                                                                                                                                                                                     179
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D4T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D4T)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  4d4t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_HRSS2 | P0DOE6: 2vqp 2ykd 4v23
        MATRX_HRSVA | P0DOE7: 2vqp 2ykd 4v23

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4D4T)