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(-) Description

Title :  STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE LOW IRON FORM
 
Authors :  K. Zeth, R. Buecheler, W. Boland
Date :  19 May 11  (Deposition) - 29 Jun 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Metal-Binding Protein, Iron Uptake, Ferritin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Pesek, R. Buecheler, R. Albrecht, W. Boland, K. Zeth
Structure And Mechanism Of Iron Translocation By A Dps Protein From Microbacterium Arborescens.
J. Biol. Chem. V. 286 34872 2011
PubMed-ID: 21768097  |  Reference-DOI: 10.1074/JBC.M111.246108

(-) Compounds

Molecule 1 - AFP
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Organism Scientific: MICROBACTERIUM ARBORESCENS
    Organism Taxid: 33883
    Synonym: DPS

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1FE2Ligand/IonFE (III) ION
2OFE10Ligand/IonIRON(II) OXIDE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:70 , GLU A:74 , HIS B:43BINDING SITE FOR RESIDUE FE A1162
02AC2SOFTWARELYS A:40 , HIS A:43 , ASP A:59 , ASP B:70 , GLU B:74BINDING SITE FOR RESIDUE OFE B1162
03AC3SOFTWAREASP C:70 , GLU C:74 , HIS I:43 , HIS I:55BINDING SITE FOR RESIDUE OFE C1162
04AC4SOFTWAREASP D:70 , GLU D:74 , HOH D:2038 , LYS J:40 , HIS J:43 , ASP J:59BINDING SITE FOR RESIDUE OFE D1162
05AC5SOFTWARELYS E:40 , HIS E:43 , ASP E:59 , HOH E:2019 , ASP F:70 , GLU F:74BINDING SITE FOR RESIDUE OFE E1162
06AC6SOFTWAREASP E:70 , GLU E:74 , HOH E:2029 , LYS F:40 , HIS F:43 , ASP F:59BINDING SITE FOR RESIDUE OFE F1162
07AC7SOFTWAREASP G:70 , GLU G:74 , HOH G:2040 , LYS H:40 , HIS H:43 , ASP H:59BINDING SITE FOR RESIDUE OFE G1162
08AC8SOFTWAREHIS G:43 , HIS G:55 , ASP H:70 , GLU H:74BINDING SITE FOR RESIDUE OFE H1162
09AC9SOFTWARELYS C:40 , HIS C:43 , ASP C:59 , ASP I:70 , GLU I:74 , HOH I:5000BINDING SITE FOR RESIDUE OFE I1162
10BC1SOFTWARELYS D:40 , HIS D:43 , ASP D:59 , HOH D:2023 , ASP J:70 , GLU J:74BINDING SITE FOR RESIDUE OFE J1162
11BC2SOFTWAREASP K:70 , GLU K:74 , HOH K:2033 , LYS L:40 , HIS L:43 , ASP L:59BINDING SITE FOR RESIDUE OFE K1162
12BC3SOFTWAREHIS K:43 , ASP L:70 , GLU L:74BINDING SITE FOR RESIDUE FE L1162

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YJJ)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Leu B:11 -Thr B:12
2Asn G:5 -Ile G:6
3Ile G:6 -Thr G:7
4Ala G:160 -Glu G:161
5Asp I:14 -Pro I:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YJJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YJJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2YJJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:149
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q1X6M4_9MICO    13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjja_ A: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj A  13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         


Chain B from PDB  Type:PROTEIN  Length:151
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:151
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159 
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLA 160
               SCOP domains d2yjjb_ B: automated matches                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj B  10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLA 160
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159 


Chain C from PDB  Type:PROTEIN  Length:149
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:149
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q1X6M4_9MICO    13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjc_ C: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj C  13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         


Chain D from PDB  Type:PROTEIN  Length:148
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        
         Q1X6M4_9MICO    14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjd_ D: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj D  14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        


Chain E from PDB  Type:PROTEIN  Length:150
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:150
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q1X6M4_9MICO    12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjje_ E: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yjj E  12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161


Chain F from PDB  Type:PROTEIN  Length:150
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:150
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q1X6M4_9MICO    12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjf_ F: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yjj F  12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161


Chain G from PDB  Type:PROTEIN  Length:157
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:157
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       
         Q1X6M4_9MICO     5 NITTPALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjg_ G: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj G   5 NITTPALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       


Chain H from PDB  Type:PROTEIN  Length:147
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:147
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       
         Q1X6M4_9MICO    15 PEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjh_ H: automated matches                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj H  15 PEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       


Chain I from PDB  Type:PROTEIN  Length:148
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        
         Q1X6M4_9MICO    14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjji_ I: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj I  14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        


Chain J from PDB  Type:PROTEIN  Length:148
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        
         Q1X6M4_9MICO    14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjj_ J: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj J  14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        


Chain K from PDB  Type:PROTEIN  Length:149
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:149
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q1X6M4_9MICO    13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjk_ K: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjj K  13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         


Chain L from PDB  Type:PROTEIN  Length:150
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:150
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q1X6M4_9MICO    12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjjl_ L: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----------Ferritin-2yjjL01 L:23-161                                                                                                                   Pfam domains (1)
           Pfam domains (2) -----------Ferritin-2yjjL02 L:23-161                                                                                                                   Pfam domains (2)
           Pfam domains (3) -----------Ferritin-2yjjL03 L:23-161                                                                                                                   Pfam domains (3)
           Pfam domains (4) -----------Ferritin-2yjjL04 L:23-161                                                                                                                   Pfam domains (4)
           Pfam domains (5) -----------Ferritin-2yjjL05 L:23-161                                                                                                                   Pfam domains (5)
           Pfam domains (6) -----------Ferritin-2yjjL06 L:23-161                                                                                                                   Pfam domains (6)
           Pfam domains (7) -----------Ferritin-2yjjL07 L:23-161                                                                                                                   Pfam domains (7)
           Pfam domains (8) -----------Ferritin-2yjjL08 L:23-161                                                                                                                   Pfam domains (8)
           Pfam domains (9) -----------Ferritin-2yjjL09 L:23-161                                                                                                                   Pfam domains (9)
          Pfam domains (10) -----------Ferritin-2yjjL10 L:23-161                                                                                                                   Pfam domains (10)
          Pfam domains (11) -----------Ferritin-2yjjL11 L:23-161                                                                                                                   Pfam domains (11)
          Pfam domains (12) -----------Ferritin-2yjjL12 L:23-161                                                                                                                   Pfam domains (12)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yjj L  12 TADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YJJ)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q1X6M4_9MICO | Q1X6M4)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q1X6M4_9MICO | Q1X6M4: 2yjk

(-) Related Entries Specified in the PDB File

2yjk STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE HIGH IRON FORM