Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE LOW IRON FORM
Keywords METAL-BINDING PROTEIN, IRON UPTAKE, FERRITIN FOLD
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YJJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AFP  A 149 1128 0
2  Protein   AFP  B 151 1137 0
3  Protein   AFP  C 149 1128 0
4  Protein   AFP  D 148 1123 0
5  Protein   AFP  E 150 1133 0
6  Protein   AFP  F 150 1133 0
7  Protein   AFP  G 157 1185 0
8  Protein   AFP  H 147 1115 0
9  Protein   AFP  I 148 1123 0
10  Protein   AFP  J 148 1123 0
11  Protein   AFP  K 149 1128 0
12  Protein   AFP  L 150 1133 0
13  Ligand   AFP  A 1 0 1
14  Ligand   AFP  B 1 0 2
15  Ligand   AFP  C 1 0 2
16  Ligand   AFP  D 1 0 2
17  Ligand   AFP  E 1 0 2
18  Ligand   AFP  F 1 0 2
19  Ligand   AFP  G 1 0 2
20  Ligand   AFP  H 1 0 2
21  Ligand   AFP  I 1 0 2
22  Ligand   AFP  J 1 0 2
23  Ligand   AFP  L 1 0 1
24  Ligand   AFP  K 1 0 2
25 Water     920 0 920
total       2728 13589 942
Proteins
Unit 1 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 2 ALA10 LEU11 THR12 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160
Unit 3 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 4 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 5 THR12 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 6 THR12 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 7 ASN5 ILE6 THR7 THR8 PRO9 ALA10 LEU11 THR12 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 8 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 9 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 10 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 11 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Unit 12 THR12 ALA13 ASP14 PRO15 GLU16 VAL17 ALA18 ALA19 ALA20 ALA21 ALA22 GLN23 PHE24 LEU25 THR26 PRO27 VAL28 VAL29 HIS30 LYS31 MET32 GLN33 ALA34 LEU35 VAL36 VAL37 ASN38 GLY39 LYS40 GLN41 ALA42 HIS43 TRP44 ASN45 VAL46 ARG47 GLY48 SER49 ASN50 PHE51 ILE52 ALA53 ILE54 HIS55 GLU56 LEU57 LEU58 ASP59 SER60 VAL61 VAL62 ALA63 HIS64 ALA65 GLN66 ASP67 TYR68 ALA69 ASP70 THR71 ALA72 ALA73 GLU74 ARG75 ILE76 VAL77 ALA78 LEU79 GLY80 LEU81 PRO82 ILE83 ASP84 SER85 ARG86 VAL87 SER88 THR89 MET90 ALA91 GLU92 LYS93 THR94 SER95 THR96 ALA97 VAL98 PRO99 ALA100 GLY101 PHE102 ALA103 GLN104 TRP105 GLN106 ASP107 GLU108 ILE109 LYS110 ALA111 ILE112 VAL113 SER114 ASP115 ILE116 ASP117 ALA118 ALA119 LEU120 VAL121 ASP122 LEU123 GLN124 ALA125 ALA126 ILE127 ASP128 GLY129 LEU130 ASP131 GLU132 VAL133 ASP134 LEU135 THR136 SER137 GLN138 ASP139 VAL140 ALA141 ILE142 GLU143 ILE144 LYS145 ARG146 GLY147 VAL148 ASP149 LYS150 ASP151 ARG152 TRP153 PHE154 LEU155 LEU156 ALA157 HIS158 LEU159 ALA160 GLU161
Ligands
Unit 13 FE1162
Unit 14 OFE1162
Unit 15 OFE1162
Unit 16 OFE1162
Unit 17 OFE1162
Unit 18 OFE1162
Unit 19 OFE1162
Unit 20 OFE1162
Unit 21 OFE1162
Unit 22 OFE1162
Unit 23 FE1162
Unit 24 OFE1162
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany