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(-) Description

Title :  STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE HIGH IRON FORM
 
Authors :  K. Zeth, R. Buecheler, W. Boland
Date :  19 May 11  (Deposition) - 01 Jun 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Metal-Binding Protein, Iron Uptake, Ferritin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Pesek, R. Buecheler, R. Albrecht, W. Boland, K. Zeth
Structure And Mechanism Of Iron Translocation By A Dps Protein From Microbacterium Arborescens.
J. Biol. Chem. V. 286 34872 2011
PubMed-ID: 21768097  |  Reference-DOI: 10.1074/JBC.M111.246108

(-) Compounds

Molecule 1 - AFP
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Organism Scientific: MICROBACTERIUM ARBORESCENS
    Organism Taxid: 33883
    Synonym: DPS

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1FE6Ligand/IonFE (III) ION
2OFE11Ligand/IonIRON(II) OXIDE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:67 , GLU A:71 , HOH A:2027 , LYS B:37 , HIS B:40 , ASP B:56BINDING SITE FOR RESIDUE OFE A1159
02AC2SOFTWARELYS A:37 , HIS A:40 , ASP A:56 , ASP B:67 , GLU B:71BINDING SITE FOR RESIDUE OFE B1159
03AC3SOFTWAREHOH B:2047 , HOH B:2051 , HOH D:2055 , HOH D:2059 , HOH L:2050 , HOH L:2053BINDING SITE FOR RESIDUE FE B1160
04AC4SOFTWAREASP C:67 , GLU C:71 , HOH C:2024 , LYS I:37 , HIS I:40 , ASP I:56BINDING SITE FOR RESIDUE OFE C1159
05AC5SOFTWAREASP D:67 , GLU D:71 , HOH D:2026 , LYS J:37 , HIS J:40 , ASP J:56BINDING SITE FOR RESIDUE OFE D1159
06AC6SOFTWAREHOH G:2080 , HOH G:2081 , HOH I:2036 , HOH I:2037 , HOH K:2046 , HOH K:2047BINDING SITE FOR RESIDUE FE D1160
07AC7SOFTWAREASP E:67 , GLU E:71 , HOH E:2029 , LYS F:37 , HIS F:40 , ASP F:56BINDING SITE FOR RESIDUE OFE E1159
08AC8SOFTWAREHIS E:40 , HIS E:52 , HOH E:2012 , ASP F:67 , GLU F:71BINDING SITE FOR RESIDUE OFE F1159
09AC9SOFTWAREASP G:67 , GLU G:71 , HOH G:2040 , LYS H:37 , HIS H:40 , ASP H:56BINDING SITE FOR RESIDUE OFE G1159
10BC1SOFTWARELYS C:37 , HIS C:40 , ASP C:56 , HOH C:2011 , ASP I:67 , GLU I:71BINDING SITE FOR RESIDUE OFE H1159
11BC2SOFTWAREHIS G:40 , HOH G:2029 , ASP H:67 , GLU H:71BINDING SITE FOR RESIDUE FE I1159
12BC3SOFTWARELYS D:37 , HIS D:40 , ASP D:56 , HOH D:2018 , ASP J:67 , GLU J:71BINDING SITE FOR RESIDUE OFE J1159
13BC4SOFTWAREASP K:67 , GLU K:71 , HOH K:2022 , LYS L:37 , HIS L:40 , ASP L:56BINDING SITE FOR RESIDUE OFE K1159
14BC5SOFTWARELYS K:37 , HIS K:40 , ASP K:56 , HOH K:2014 , ASP L:67 , GLU L:71BINDING SITE FOR RESIDUE OFE L1159
15BC6SOFTWAREHOH B:2045 , HOH B:2046 , HOH D:2053 , HOH D:2054 , HOH L:2048 , HOH L:2049BINDING SITE FOR RESIDUE FE L1160
16BC7SOFTWAREHOH F:2050 , HOH F:2051 , HOH H:2060 , HOH H:2061 , HOH J:2050 , HOH J:2051BINDING SITE FOR RESIDUE FE J1160

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YJK)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1Ala B:7 -Leu B:8
2Leu B:8 -Thr B:9
3Thr C:9 -Ala C:10
4Ala C:10 -Asp C:11
5Ala E:7 -Leu E:8
6Thr E:9 -Ala E:10
7Ala H:7 -Leu H:8
8Thr H:9 -Ala H:10
9Ala L:7 -Leu L:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YJK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YJK)

(-) Exons   (0, 0)

(no "Exon" information available for 2YJK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:149
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q1X6M4_9MICO    13 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjka_ A: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk A  10 ADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149         


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkb_ B: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk B   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain C from PDB  Type:PROTEIN  Length:157
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:157
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       
         Q1X6M4_9MICO     5 NITTPALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkc_ C: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk C   2 NITTPALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain D from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkd_ D: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk D   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain E from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjke_ E: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk E   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain F from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkf_ F: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk F   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain G from PDB  Type:PROTEIN  Length:153
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:153
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158   
         Q1X6M4_9MICO     9 PALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkg_ G: automated matches                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk G   6 PALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155   


Chain H from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkh_ H: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk H   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain I from PDB  Type:PROTEIN  Length:148
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        
         Q1X6M4_9MICO    14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjki_ I: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk I  11 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain J from PDB  Type:PROTEIN  Length:148
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        
         Q1X6M4_9MICO    14 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkj_ J: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk J  11 DPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain K from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkk_ K: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk K   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  


Chain L from PDB  Type:PROTEIN  Length:152
 aligned with Q1X6M4_9MICO | Q1X6M4 from UniProtKB/TrEMBL  Length:161

    Alignment length:152
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159  
         Q1X6M4_9MICO    10 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 161
               SCOP domains d2yjkl_ L: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------Ferritin-2yjkL01 L:20-158                                                                                                                   Pfam domains (1)
           Pfam domains (2) -------------Ferritin-2yjkL02 L:20-158                                                                                                                   Pfam domains (2)
           Pfam domains (3) -------------Ferritin-2yjkL03 L:20-158                                                                                                                   Pfam domains (3)
           Pfam domains (4) -------------Ferritin-2yjkL04 L:20-158                                                                                                                   Pfam domains (4)
           Pfam domains (5) -------------Ferritin-2yjkL05 L:20-158                                                                                                                   Pfam domains (5)
           Pfam domains (6) -------------Ferritin-2yjkL06 L:20-158                                                                                                                   Pfam domains (6)
           Pfam domains (7) -------------Ferritin-2yjkL07 L:20-158                                                                                                                   Pfam domains (7)
           Pfam domains (8) -------------Ferritin-2yjkL08 L:20-158                                                                                                                   Pfam domains (8)
           Pfam domains (9) -------------Ferritin-2yjkL09 L:20-158                                                                                                                   Pfam domains (9)
          Pfam domains (10) -------------Ferritin-2yjkL10 L:20-158                                                                                                                   Pfam domains (10)
          Pfam domains (11) -------------Ferritin-2yjkL11 L:20-158                                                                                                                   Pfam domains (11)
          Pfam domains (12) -------------Ferritin-2yjkL12 L:20-158                                                                                                                   Pfam domains (12)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yjk L   7 ALTADPEVAAAAAQFLTPVVHKMQALVVNGKQAHWNVRGSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTSTAVPAGFAQWQDEIKAIVSDIDAALVDLQAAIDGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHLAE 158
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YJK)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q1X6M4_9MICO | Q1X6M4)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q1X6M4_9MICO | Q1X6M4: 2yjj

(-) Related Entries Specified in the PDB File

2yjj STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE LOW IRON FORM