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(-) Description

Title :  INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII
 
Authors :  J. Vedodova, M. Gamble, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Date :  09 Mar 10  (Deposition) - 11 Aug 10  (Release) - 21 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  E,F  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Hydrolase, Serine Protease, Intracellular Proteinase Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vevodova, M. Gamble, G. Kunze, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Crystal Structure Of An Intracellular Subtilisin Reveals Novel Structural Features Unique To This Subtilisin Family.
Structure V. 18 744 2010
PubMed-ID: 20541512  |  Reference-DOI: 10.1016/J.STR.2010.03.008

(-) Compounds

Molecule 1 - INTRACELLULAR SUBTILISIN PROTEASE
    Chains: A, C, D, E, F
    EC Number: 3.4.21.62
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: BL21
    Expression System Plasmid: PET22B
    Expression System Taxid: 511693
    Expression System Vector: PET
    Mutation: YES
    Organism Scientific: BACILLUS CLAUSII
    Organism Taxid: 79880
    Other Details: THESE CHAINS CONTAIN 1 OXIDISED CYS
    Other Details - Source: ISOLATED FROM A NOVOZYMES STRAIN B. CLAUSII STRAIN - STRAIN NUMBER AVAILABLE ON REQUEST.
    Synonym: INTRACELLULAR SUBTILISIN
 
Molecule 2 - INTRACELLULAR SUBTILISIN PROTEASE
    Chains: B
    EC Number: 3.4.21.62
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: BL21
    Expression System Plasmid: PET22B
    Expression System Taxid: 511693
    Expression System Vector: PET
    Mutation: YES
    Organism Scientific: BACILLUS CLAUSII
    Organism Taxid: 79880
    Other Details: THIS CHAIN CONTAINS 2 OXIDISED CYS
    Other Details - Source: ISOLATED FROM A NOVOZYMES STRAIN B. CLAUSII STRAIN - STRAIN NUMBER AVAILABLE ON REQUEST.
    Synonym: INTRACELLULAR SUBTILISIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):   CD  
Biological Unit 2 (1x):     EF
Biological Unit 3 (1x): AB    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
11PE6Ligand/IonPENTAETHYLENE GLYCOL
2CSX7Mod. Amino AcidS-OXY CYSTEINE
3GOL2Ligand/IonGLYCEROL
4NA6Ligand/IonSODIUM ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CSX2Mod. Amino AcidS-OXY CYSTEINE
3GOL2Ligand/IonGLYCEROL
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CSX2Mod. Amino AcidS-OXY CYSTEINE
3GOL-1Ligand/IonGLYCEROL
4NA-1Ligand/IonSODIUM ION
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CSX3Mod. Amino AcidS-OXY CYSTEINE
3GOL-1Ligand/IonGLYCEROL
4NA-1Ligand/IonSODIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP C:58 , ALA C:97 , THR C:99 , SER C:101 , VAL C:103 , HOH C:2107BINDING SITE FOR RESIDUE NA C1317
02AC2SOFTWAREASP A:58 , ALA A:97 , THR A:99 , SER A:101 , VAL A:103 , HOH A:2099BINDING SITE FOR RESIDUE NA A1317
03AC3SOFTWAREALA A:198 , TYR A:200 , ASN A:201 , GLU A:202 , VAL A:203 , ALA A:205 , GLU A:224 , ASP A:226 , GLU A:277 , TYR A:281 , HOH A:2171 , HOH A:2241 , GLU B:279BINDING SITE FOR RESIDUE 1PE A1318
04AC4SOFTWAREASP B:58 , ALA B:97 , THR B:99 , SER B:101 , VAL B:103 , HOH B:2080BINDING SITE FOR RESIDUE NA B1317
05AC5SOFTWAREGLU A:279 , ALA B:198 , TYR B:200 , ASN B:201 , GLU B:202 , VAL B:203 , GLU B:224 , ASP B:226 , GLU B:277 , TYR B:281 , HOH B:2125 , HOH B:2208BINDING SITE FOR RESIDUE 1PE B1318
06AC6SOFTWAREALA C:198 , TYR C:200 , ASN C:201 , GLU C:202 , VAL C:203 , ALA C:205 , GLU C:224 , ASP C:226 , GLU C:277 , TYR C:281 , HOH C:2199 , HOH C:2261 , GLU D:279BINDING SITE FOR RESIDUE 1PE C1319
07AC7SOFTWAREASN C:201 , HOH C:2262 , HOH C:2263 , HOH C:2264 , ASN D:174BINDING SITE FOR RESIDUE GOL C1320
08AC8SOFTWAREASP D:58 , ALA D:97 , THR D:99 , SER D:101 , VAL D:103 , HOH D:2073BINDING SITE FOR RESIDUE NA D1317
09AC9SOFTWAREARG C:273 , GLU C:279 , ALA D:198 , TYR D:200 , ASN D:201 , GLU D:202 , VAL D:203 , ALA D:205 , GLU D:224 , ASP D:226 , GLU D:277 , TYR D:281 , HOH D:2150 , HOH D:2212BINDING SITE FOR RESIDUE 1PE D1318
10BC1SOFTWAREASN C:300 , ALA D:267 , ALA D:270 , GLN D:283 , ARG D:286 , ARG D:287 , HOH D:2213BINDING SITE FOR RESIDUE GOL D1319
11BC2SOFTWAREASP E:58 , ALA E:97 , THR E:99 , SER E:101 , VAL E:103 , HOH E:2098BINDING SITE FOR RESIDUE NA E1317
12BC3SOFTWAREALA E:198 , TYR E:200 , ASN E:201 , GLU E:202 , VAL E:203 , ALA E:205 , GLU E:224 , ASP E:226 , GLU E:277 , TYR E:281 , HOH E:2197 , HOH E:2265 , GLU F:279BINDING SITE FOR RESIDUE 1PE E1318
13BC4SOFTWAREASP F:58 , ALA F:97 , THR F:99 , SER F:101 , VAL F:103 , HOH F:2119BINDING SITE FOR RESIDUE NA F1317
14BC5SOFTWAREGLU E:279 , ALA F:198 , TYR F:200 , ASN F:201 , GLU F:202 , VAL F:203 , ALA F:205 , GLU F:224 , ASP F:226 , GLU F:277 , TYR F:281 , HOH F:2235 , HOH F:2310BINDING SITE FOR RESIDUE 1PE F1318

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X8J)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Tyr A:196 -Pro A:197
2Tyr B:196 -Pro B:197
3Tyr C:196 -Pro C:197
4Tyr D:196 -Pro D:197
5Tyr E:196 -Pro E:197
6Tyr F:196 -Pro F:197

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2X8J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2X8J)

(-) Exons   (0, 0)

(no "Exon" information available for 2X8J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     
         D0AB41_BACCS     2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eeeeee......hhhhhhhhhhhhhhhhhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee..---------............eeeeee.........---.....eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j A   2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAG---------NEFAYPAAYNEVIAVGAVDFDLRLSDF---NEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181|        -|      201       211      |  -|      231       241       251       261       271       281       291       301       311     
                                                                                                                                                                                                           179-CSX      192                       218 222                                                                                              
                                                                                                                                                                                                              182                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:307
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     
         D0AB41_BACCS     2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eeeeee......hhhhhhhhhhhhh..hhhhh..eeeeee.........hhh.eeeeee................hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee.................eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j B   2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGcQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAGN--------NEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    11        21        31        41        51|       61        71        81        91       101       111       121       131       141       151       161       171       181 |       -|      201       211       221       231       241       251       261       271       281       291       301       311     
                                                                             52-CSX                                                                                                                        179-CSX      192                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:304
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
         D0AB41_BACCS     1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeeee......hhhhhhhhhhhhhhhhhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee........----.....eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j C   1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAGN--------NEFAYPAAYNEVIAVGAVDFDLRLSD----TEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  |      - |     200       210      |  - |     230       240       250       260       270       280       290       300       310      
                                                                                                                                                                                                            179-CSX      192                      217  222                                                                                              


Chain D from PDB  Type:PROTEIN  Length:308
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
         D0AB41_BACCS     1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeeee......hhhhhhhhhhhhh..hhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee.................eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j D   1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAGN--------NEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  |      - |     200       210       220       230       240       250       260       270       280       290       300       310      
                                                                                                                                                                                                            179-CSX      192                                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:307
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
         D0AB41_BACCS     1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeeee......hhhhhhhhhhhhhhhhhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee.....------............eeeeee........---......eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j E   1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAGNEG------NEFAYPAAYNEVIAVGAVDFDLRLSD---TNEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    |    - |     200       210      |  -|      230       240       250       260       270       280       290       300       310      
                                                                                                                                                                                                            179-CSX85    192                      217 221                                                                                               


Chain F from PDB  Type:PROTEIN  Length:307
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     
         D0AB41_BACCS     2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------Peptidase_S8-2x8jF01 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------Peptidase_S8-2x8jF02 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------Peptidase_S8-2x8jF03 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------Peptidase_S8-2x8jF04 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------Peptidase_S8-2x8jF05 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------Peptidase_S8-2x8jF06 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (6)
         Sec.struct. author ..eee..eeeeeee......hhhhhhhhhhhhhhhhhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee.................eeee...eeee.hhh.eeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8j F   2 RKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVcAAGN--------NEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181 |       -|      201       211       221       231       241       251       261       271       281       291       301       311     
                                                                                                                                                                                                           179-CSX      192
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2X8J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2X8J)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Peptidase_S8] (104)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (D0AB41_BACCS | D0AB41)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0AB41_BACCS | D0AB41: 2wv7 2wwt 2xrm

(-) Related Entries Specified in the PDB File

2wv7 INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII
2wwt INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII