Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII
 
Authors :  J. Vevodova, M. Gamble, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Date :  15 Oct 09  (Deposition) - 08 Sep 10  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Hydrolase, Intracellular Proteinase Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vevodova, M. Gamble, G. Kunze, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Crystal Structure Of An Intracellular Subtilisin Reveals Novel Structural Features Unique To This Subtilisin Family.
Structure V. 18 744 2010
PubMed-ID: 20541512  |  Reference-DOI: 10.1016/J.STR.2010.03.008

(-) Compounds

Molecule 1 - INTRACELLULAR SUBTILISIN PROTEASE
    Chains: A, B, C, D, E, F
    EC Number: 3.4.21.62
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET
    Organism Scientific: BACILLUS CLAUSII
    Organism Taxid: 79880
    Other Details: ISOLATED FROM A NOVOZYMES STRAIN OF B. CLAUSII. STRAIN NUMBER AVAILABLE ON REQUEST.

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1NA5Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:58 , ALA B:97 , THR B:99 , SER B:101 , VAL B:103BINDING SITE FOR RESIDUE NA B 401
2AC2SOFTWAREASP C:58 , ALA C:97 , THR C:99 , SER C:101 , VAL C:103BINDING SITE FOR RESIDUE NA C 401
3AC3SOFTWAREASP D:58 , ALA D:97 , THR D:99 , SER D:101 , VAL D:103BINDING SITE FOR RESIDUE NA D 401
4AC4SOFTWAREASP E:58 , ALA E:97 , THR E:99 , SER E:101 , GLY E:102 , VAL E:103BINDING SITE FOR RESIDUE NA E 401
5AC5SOFTWAREASP F:58 , ALA F:97 , THR F:99 , SER F:101 , VAL F:103BINDING SITE FOR RESIDUE NA F 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WV7)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Gly A:74 -Gly A:75
2Tyr A:196 -Pro A:197
3Gly B:74 -Gly B:75
4Tyr B:196 -Pro B:197
5Gly C:74 -Gly C:75
6Tyr C:196 -Pro C:197
7Gly D:74 -Gly D:75
8Tyr D:196 -Pro D:197
9Gly E:74 -Gly E:75
10Tyr E:196 -Pro E:197
11Gly F:74 -Gly F:75
12Tyr F:196 -Pro F:197

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WV7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WV7)

(-) Exons   (0, 0)

(no "Exon" information available for 2WV7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:314
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312    
         D0AB41_BACCS     3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee......hhhhhhh.hhhhhhhhhhhh..eeeeee.............eeeeee................hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.......eeeeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee......--------...eeee...eeeee...eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 A   3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212  |      - |     232       242       252       262       272       282       292       302       312    
                                                                                                                                                                                                              183      192                    215      224                                                                                            


Chain B from PDB  Type:PROTEIN  Length:298
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:314
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312    
         D0AB41_BACCS     3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee......hhhhhhhhhhhhhhhhhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee......--------...eeee...eeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 B   3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212  |      - |     232       242       252       262       272       282       292       302       312    
                                                                                                                                                                                                              183      192                    215      224                                                                                            


Chain C from PDB  Type:PROTEIN  Length:298
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:314
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312    
         D0AB41_BACCS     3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee......hhhhhhhhhhhh...hhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee...eehhhhhhhhhhhhh..eeeee...--------............eeeeee......--------...eeee...eeeee...eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 C   3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212  |      - |     232       242       252       262       272       282       292       302       312    
                                                                                                                                                                                                              183      192                    215      224                                                                                            


Chain D from PDB  Type:PROTEIN  Length:298
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:314
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312    
         D0AB41_BACCS     3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeeeeee......hhhhhhh.hhhhhhhhhhhh..eeeeee.........hhh.eeeeee................hhhhhhhhhhhh..............eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhhh..eeeee...--------............eeeeee......--------...eeee...eeeee...eeeeeee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 D   3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212  |      - |     232       242       252       262       272       282       292       302       312    
                                                                                                                                                                                                              183      192                    215      224                                                                                            


Chain E from PDB  Type:PROTEIN  Length:298
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:314
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312    
         D0AB41_BACCS     3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee...ee.hhhhhhh....hhhhhhhhh..eeeeee.............eeeeee..hhhhh.........hhhhhhhhhhhh.....ee.......eeeeee......eehhhhhhhhhhhhhhh.........eeee.ee....hhhhhhhhhhhhh...eeeee...--------............eeeeee......--------...eeee...eeeee...eeeeeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 E   3 KFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212  |      - |     232       242       252       262       272       282       292       302       312    
                                                                                                                                                                                                              183      192                    215      224                                                                                            


Chain F from PDB  Type:PROTEIN  Length:295
 aligned with D0AB41_BACCS | D0AB41 from UniProtKB/TrEMBL  Length:321

    Alignment length:316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      
         D0AB41_BACCS     1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEEIDIVAPGVGIKSTYLDSGYAELSGTSMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------Peptidase_S8-2wv7F01 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------Peptidase_S8-2wv7F02 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------Peptidase_S8-2wv7F03 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------Peptidase_S8-2wv7F04 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------Peptidase_S8-2wv7F05 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (5)
           Pfam domains (6) -------------------------------------------Peptidase_S8-2wv7F06 F:44-308                                                                                                                                                                                                                                            -------- Pfam domains (6)
         Sec.struct. author ...eee...eeeeee...ee.hhhhhhhhhhhhhh.hhhhh..eeeeee.........hhh.eeeeee..hhhhhh........hhhhhhhhhhhh.....ee.......eeeeee......eehhhhhhhhhhhhhh..-----...eeee.ee....hhhhhhhhhhhhh...eeeee...--------............eeeeee......--------...eeee...eeee.....eeeee....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.ee....hhhhhh..ee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv7 F   1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR-----QMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGN--------NEFAYPAAYNEVIAVGAVDFDLRL--------EIDIVAPGVGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEGNGFLTLDLVERITGQFT 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     | 150       160       170       180  |      - |     200       210    |    -   |   230       240       250       260       270       280       290       300       310      
                                                                                                                                                                     140   146                                  183      192                    215      224
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WV7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WV7)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Peptidase_S8] (104)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (D0AB41_BACCS | D0AB41)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:74 - Gly A:75   [ RasMol ]  
    Gly B:74 - Gly B:75   [ RasMol ]  
    Gly C:74 - Gly C:75   [ RasMol ]  
    Gly D:74 - Gly D:75   [ RasMol ]  
    Gly E:74 - Gly E:75   [ RasMol ]  
    Gly F:74 - Gly F:75   [ RasMol ]  
    Tyr A:196 - Pro A:197   [ RasMol ]  
    Tyr B:196 - Pro B:197   [ RasMol ]  
    Tyr C:196 - Pro C:197   [ RasMol ]  
    Tyr D:196 - Pro D:197   [ RasMol ]  
    Tyr E:196 - Pro E:197   [ RasMol ]  
    Tyr F:196 - Pro F:197   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wv7
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  D0AB41_BACCS | D0AB41
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.4.21.62
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  D0AB41_BACCS | D0AB41
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0AB41_BACCS | D0AB41: 2wwt 2x8j 2xrm

(-) Related Entries Specified in the PDB File

2wwt INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII