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2X8J
Biol. Unit 2
Info
Asym.Unit (322 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (109 KB)
Biol.Unit 3 (108 KB)
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(1)
Title
:
INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII
Authors
:
J. Vedodova, M. Gamble, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Date
:
09 Mar 10 (Deposition) - 11 Aug 10 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.56
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D (1x)
Biol. Unit 2: E,F (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Hydrolase, Serine Protease, Intracellular Proteinase Regulation
(Keyword Search:
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Reference
:
J. Vevodova, M. Gamble, G. Kunze, A. Ariza, E. Dodson, D. D. Jones, K. S. Wilson
Crystal Structure Of An Intracellular Subtilisin Reveals Novel Structural Features Unique To This Subtilisin Family.
Structure V. 18 744 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
2a: S-OXY CYSTEINE (CSXa)
2b: S-OXY CYSTEINE (CSXb)
2c: S-OXY CYSTEINE (CSXc)
2d: S-OXY CYSTEINE (CSXd)
2e: S-OXY CYSTEINE (CSXe)
2f: S-OXY CYSTEINE (CSXf)
2g: S-OXY CYSTEINE (CSXg)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
View:
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No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CSX
2
Mod. Amino Acid
S-OXY CYSTEINE
3
GOL
-1
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: BC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
BC2
SOFTWARE
ASP E:58 , ALA E:97 , THR E:99 , SER E:101 , VAL E:103 , HOH E:2098
BINDING SITE FOR RESIDUE NA E1317
2
BC3
SOFTWARE
ALA E:198 , TYR E:200 , ASN E:201 , GLU E:202 , VAL E:203 , ALA E:205 , GLU E:224 , ASP E:226 , GLU E:277 , TYR E:281 , HOH E:2197 , HOH E:2265 , GLU F:279
BINDING SITE FOR RESIDUE 1PE E1318
3
BC4
SOFTWARE
ASP F:58 , ALA F:97 , THR F:99 , SER F:101 , VAL F:103 , HOH F:2119
BINDING SITE FOR RESIDUE NA F1317
4
BC5
SOFTWARE
GLU E:279 , ALA F:198 , TYR F:200 , ASN F:201 , GLU F:202 , VAL F:203 , ALA F:205 , GLU F:224 , ASP F:226 , GLU F:277 , TYR F:281 , HOH F:2235 , HOH F:2310
BINDING SITE FOR RESIDUE 1PE F1318
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_S8_2x8jF01 (F:44-308)
1b: PFAM_Peptidase_S8_2x8jF02 (F:44-308)
1c: PFAM_Peptidase_S8_2x8jF03 (F:44-308)
1d: PFAM_Peptidase_S8_2x8jF04 (F:44-308)
1e: PFAM_Peptidase_S8_2x8jF05 (F:44-308)
1f: PFAM_Peptidase_S8_2x8jF06 (F:44-308)
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Clans
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Organisms
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(
)
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Bacillus clausii
(4)
1a
Peptidase_S8-2x8jF01
F:44-308
1b
Peptidase_S8-2x8jF02
F:44-308
1c
Peptidase_S8-2x8jF03
F:44-308
1d
Peptidase_S8-2x8jF04
F:44-308
1e
Peptidase_S8-2x8jF05
F:44-308
1f
Peptidase_S8-2x8jF06
F:44-308
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (322 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
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