2X3Y - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF GMHA FROM BURKHOLDERIA PSEUDOMALLEI

Authors :   N. J. Harmer

Date :   28 Jan 10 (Deposition) - 19 May 10 (Release) - 21 Jul 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Capsule Biogenesis/Degradation, Capsule, Isomerase, Carbohydrate Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. J. Harmer
The Structure Of Sedoheptulose-7-Phosphate Isomerase From Burkholderia Pseudomallei Reveals A Zinc Binding Site At The Heart Of The Active Site.
J. Mol. Biol. V. 400 379 2010
PubMed-ID: 20447408 | Reference-DOI: 10.1016/J.JMB.2010.04.058

Molecule 1 - PHOSPHOHEPTOSE ISOMERASE
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	5.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28
	Expression System Strain	:	ROSETTA (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	BURKHOLDERIA PSEUDOMALLEI
	Organism Taxid	:	272560
	Strain	:	K96243
	Synonym	:	SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE, GMHA

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:64 , GLU A:68 , HIS A:183 , GLN B:175	BINDING SITE FOR RESIDUE ZN A1196
2	AC2	SOFTWARE	GLN A:175 , HIS B:64 , GLU B:68 , HIS B:183	BINDING SITE FOR RESIDUE ZN B1196
3	AC3	SOFTWARE	HIS C:64 , GLU C:68 , HIS C:183 , GLN D:175	BINDING SITE FOR RESIDUE ZN C1196
4	AC4	SOFTWARE	GLN C:175 , HIS D:64 , GLU D:68 , HIS D:183	BINDING SITE FOR RESIDUE ZN D1196
5	AC5	SOFTWARE	HIS E:64 , GLU E:68 , HIS E:183 , GLN F:175	BINDING SITE FOR RESIDUE ZN E1196
6	AC6	SOFTWARE	GLN E:175 , HIS F:64 , GLU F:68 , HIS F:183	BINDING SITE FOR RESIDUE ZN F1196
7	AC7	SOFTWARE	HIS G:64 , GLU G:68 , HIS G:183 , GLN H:175	BINDING SITE FOR RESIDUE ZN G1196
8	AC8	SOFTWARE	GLN G:175 , HIS H:64 , GLU H:68 , HIS H:183	BINDING SITE FOR RESIDUE ZN H1196

(no "SS Bond" information available for 2X3Y)

Asymmetric Unit

No.	Residues
1	Gly C:154	-	Glu C:155

(no "SAP(SNP)/Variant" information available for 2X3Y)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GMHA_BURPS	40-197	8	A:40-195 B:40-195 C:40-195 D:40-195 E:40-195 F:40-195 G:40-195 H:40-195

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GMHA_BURPS	40-197	4	A:40-195 B:40-195 C:40-195 D:40-195 - - - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIS	PS51464	SIS domain profile.	GMHA_BURPS	40-197	4	- - - - E:40-195 F:40-195 G:40-195 H:40-195

(no "Exon" information available for 2X3Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:202
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:202
                                   1                                                                                                                                                                                                  
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
           GMHA_BURPS     - -------MENRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3ya_ A: automated matches                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------SIS  PDB: A:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x3y A  -6 ENLYFQSMENRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain B from PDB  Type:PROTEIN  Length:193
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
           GMHA_BURPS     3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yb_ B: automated matches                                                                                                                                                                      SCOP domains
               CATH domains 2x3yB00 B:3-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------SIS  PDB: B:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x3y B   3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain C from PDB  Type:PROTEIN  Length:192
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
           GMHA_BURPS     4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yc_ C: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2x3yC00 C:4-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhh....hhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------SIS  PDB: C:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2x3y C   4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain D from PDB  Type:PROTEIN  Length:193
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
           GMHA_BURPS     3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yd_ D: automated matches                                                                                                                                                                      SCOP domains
               CATH domains 2x3yD00 D:3-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------SIS  PDB: D:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x3y D   3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain E from PDB  Type:PROTEIN  Length:193
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
           GMHA_BURPS     3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3ye_ E: automated matches                                                                                                                                                                      SCOP domains
               CATH domains 2x3yE00 E:3-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------SIS  PDB: E:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x3y E   3 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain F from PDB  Type:PROTEIN  Length:192
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
           GMHA_BURPS     4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yf_ F: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2x3yF00 F:4-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------SIS  PDB: F:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2x3y F   4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain G from PDB  Type:PROTEIN  Length:192
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
           GMHA_BURPS     4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yg_ G: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2x3yG00 G:4-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhh..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------SIS  PDB: G:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2x3y G   4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain H from PDB  Type:PROTEIN  Length:191
 aligned with GMHA_BURPS | Q93UJ2 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
           GMHA_BURPS     4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
               SCOP domains d2x3yh_ H: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2x3yH00 H:4-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             CATH domains
           Pfam domains (1) ---SIS_2-2x3yH01 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---SIS_2-2x3yH02 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---SIS_2-2x3yH03 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---SIS_2-2x3yH04 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (4)
           Pfam domains (5) ---SIS_2-2x3yH05 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---SIS_2-2x3yH06 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (6)
           Pfam domains (7) ---SIS_2-2x3yH07 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (7)
           Pfam domains (8) ---SIS_2-2x3yH08 H:7-150                                                                                                                           --------------------------------------------- Pfam domains (8)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh..........eee...hhhhhhhhhhhhh..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...-.hhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------SIS  PDB: H:40-195 UniProt: 40-197                                                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2x3y H   4 RELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNR-GEMRELCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHSIFG 195
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143        |-|      163       173       183       193  
                                                                                                                                                                              152 |                                         
                                                                                                                                                                                154

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: SIS domain (85)

Superfamily: SIS domain (85)

Family: automated matches (22)

Protein domain: automated matches (22)

Burkholderia pseudomallei [TaxId: 272560] (2)

1a	d2x3ya_	A:
1b	d2x3yg_	G:
1c	d2x3yh_	H:
1d	d2x3yb_	B:
1e	d2x3yc_	C:
1f	d2x3yd_	D:
1g	d2x3ye_	E:
1h	d2x3yf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Glucose-6-phosphate isomerase like protein; domain 1 (105)

Burkholderia pseudomallei. Organism_taxid: 272560. Strain: k96243. (1)

1a	2x3yB00	B:3-195
1b	2x3yD00	D:3-195
1c	2x3yE00	E:3-195
1d	2x3yC00	C:4-195
1e	2x3yF00	F:4-195
1f	2x3yG00	G:4-195
1g	2x3yH00	H:4-195

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: SIS (53)

Family: SIS_2 (6)

Burkholderia pseudomallei (Pseudomonas pseudomallei) (2)

1a	SIS_2-2x3yH01	H:7-150
1b	SIS_2-2x3yH02	H:7-150
1c	SIS_2-2x3yH03	H:7-150
1d	SIS_2-2x3yH04	H:7-150
1e	SIS_2-2x3yH05	H:7-150
1f	SIS_2-2x3yH06	H:7-150
1g	SIS_2-2x3yH07	H:7-150
1h	SIS_2-2x3yH08	H:7-150

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (GMHA_BURPS | Q93UJ2)

molecular function
	GO:0008968	D-sedoheptulose 7-phosphate isomerase activity	Catalysis of the reaction: D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose 7-phosphate.
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:2001061	D-glycero-D-manno-heptose 7-phosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of a D-glycero-D-manno-heptose 7-phosphate.
	GO:0045227	capsule polysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
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	2x3y
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	GMHA_BURPS \| Q93UJ2
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	GMHA_BURPS \| Q93UJ2	:	2xbl

2x3z	CRYSTAL STRUCTURE OF GMHA FROM BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH PRODUCT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 8)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 8)

CATH Domains (1, 7)

Pfam Domains (1, 8)

Gene Ontology (9, 9)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File