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2X3Y
Biol. Unit 2
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Asym.Unit (510 KB)
Biol.Unit 1 (249 KB)
Biol.Unit 2 (245 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GMHA FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
N. J. Harmer
Date
:
28 Jan 10 (Deposition) - 19 May 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Capsule Biogenesis/Degradation, Capsule, Isomerase, Carbohydrate Metabolism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
N. J. Harmer
The Structure Of Sedoheptulose-7-Phosphate Isomerase From Burkholderia Pseudomallei Reveals A Zinc Binding Site At The Heart Of The Active Site.
J. Mol. Biol. V. 400 379 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
HIS E:64 , GLU E:68 , HIS E:183 , GLN F:175
BINDING SITE FOR RESIDUE ZN E1196
2
AC6
SOFTWARE
GLN E:175 , HIS F:64 , GLU F:68 , HIS F:183
BINDING SITE FOR RESIDUE ZN F1196
3
AC7
SOFTWARE
HIS G:64 , GLU G:68 , HIS G:183 , GLN H:175
BINDING SITE FOR RESIDUE ZN G1196
4
AC8
SOFTWARE
GLN G:175 , HIS H:64 , GLU H:68 , HIS H:183
BINDING SITE FOR RESIDUE ZN H1196
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SIS (E:40-195,F:40-195,G:40-195,H:40-19...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GMHA_BURPS
40-197
4
-
-
-
-
E:40-195
F:40-195
G:40-195
H:40-195
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2x3ya_ (A:)
1b: SCOP_d2x3yg_ (G:)
1c: SCOP_d2x3yh_ (H:)
1d: SCOP_d2x3yb_ (B:)
1e: SCOP_d2x3yc_ (C:)
1f: SCOP_d2x3yd_ (D:)
1g: SCOP_d2x3ye_ (E:)
1h: SCOP_d2x3yf_ (F:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Burkholderia pseudomallei [TaxId: 272560]
(2)
1a
d2x3ya_
A:
1b
d2x3yg_
G:
1c
d2x3yh_
H:
1d
d2x3yb_
B:
1e
d2x3yc_
C:
1f
d2x3yd_
D:
1g
d2x3ye_
E:
1h
d2x3yf_
F:
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CATH Domains
(1, 7)
Info
all CATH domains
1a: CATH_2x3yB00 (B:3-195)
1b: CATH_2x3yD00 (D:3-195)
1c: CATH_2x3yE00 (E:3-195)
1d: CATH_2x3yC00 (C:4-195)
1e: CATH_2x3yF00 (F:4-195)
1f: CATH_2x3yG00 (G:4-195)
1g: CATH_2x3yH00 (H:4-195)
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)
Organisms
(
)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Burkholderia pseudomallei. Organism_taxid: 272560. Strain: k96243.
(1)
1a
2x3yB00
B:3-195
1b
2x3yD00
D:3-195
1c
2x3yE00
E:3-195
1d
2x3yC00
C:4-195
1e
2x3yF00
F:4-195
1f
2x3yG00
G:4-195
1g
2x3yH00
H:4-195
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_SIS_2_2x3yH01 (H:7-150)
1b: PFAM_SIS_2_2x3yH02 (H:7-150)
1c: PFAM_SIS_2_2x3yH03 (H:7-150)
1d: PFAM_SIS_2_2x3yH04 (H:7-150)
1e: PFAM_SIS_2_2x3yH05 (H:7-150)
1f: PFAM_SIS_2_2x3yH06 (H:7-150)
1g: PFAM_SIS_2_2x3yH07 (H:7-150)
1h: PFAM_SIS_2_2x3yH08 (H:7-150)
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Clan
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SIS
(53)
Family
:
SIS_2
(6)
Burkholderia pseudomallei (Pseudomonas pseudomallei)
(2)
1a
SIS_2-2x3yH01
H:7-150
1b
SIS_2-2x3yH02
H:7-150
1c
SIS_2-2x3yH03
H:7-150
1d
SIS_2-2x3yH04
H:7-150
1e
SIS_2-2x3yH05
H:7-150
1f
SIS_2-2x3yH06
H:7-150
1g
SIS_2-2x3yH07
H:7-150
1h
SIS_2-2x3yH08
H:7-150
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Asymmetric Unit 1
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Asym.Unit (510 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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