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2X3Y
Asym. Unit
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Asym.Unit (510 KB)
Biol.Unit 1 (249 KB)
Biol.Unit 2 (245 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GMHA FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
N. J. Harmer
Date
:
28 Jan 10 (Deposition) - 19 May 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Capsule Biogenesis/Degradation, Capsule, Isomerase, Carbohydrate Metabolism
(Keyword Search:
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Reference
:
N. J. Harmer
The Structure Of Sedoheptulose-7-Phosphate Isomerase From Burkholderia Pseudomallei Reveals A Zinc Binding Site At The Heart Of The Active Site.
J. Mol. Biol. V. 400 379 2010
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
8
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:64 , GLU A:68 , HIS A:183 , GLN B:175
BINDING SITE FOR RESIDUE ZN A1196
2
AC2
SOFTWARE
GLN A:175 , HIS B:64 , GLU B:68 , HIS B:183
BINDING SITE FOR RESIDUE ZN B1196
3
AC3
SOFTWARE
HIS C:64 , GLU C:68 , HIS C:183 , GLN D:175
BINDING SITE FOR RESIDUE ZN C1196
4
AC4
SOFTWARE
GLN C:175 , HIS D:64 , GLU D:68 , HIS D:183
BINDING SITE FOR RESIDUE ZN D1196
5
AC5
SOFTWARE
HIS E:64 , GLU E:68 , HIS E:183 , GLN F:175
BINDING SITE FOR RESIDUE ZN E1196
6
AC6
SOFTWARE
GLN E:175 , HIS F:64 , GLU F:68 , HIS F:183
BINDING SITE FOR RESIDUE ZN F1196
7
AC7
SOFTWARE
HIS G:64 , GLU G:68 , HIS G:183 , GLN H:175
BINDING SITE FOR RESIDUE ZN G1196
8
AC8
SOFTWARE
GLN G:175 , HIS H:64 , GLU H:68 , HIS H:183
BINDING SITE FOR RESIDUE ZN H1196
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: SIS (A:40-195,B:40-195,C:40-195,D:40-19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GMHA_BURPS
40-197
8
A:40-195
B:40-195
C:40-195
D:40-195
E:40-195
F:40-195
G:40-195
H:40-195
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2x3ya_ (A:)
1b: SCOP_d2x3yg_ (G:)
1c: SCOP_d2x3yh_ (H:)
1d: SCOP_d2x3yb_ (B:)
1e: SCOP_d2x3yc_ (C:)
1f: SCOP_d2x3yd_ (D:)
1g: SCOP_d2x3ye_ (E:)
1h: SCOP_d2x3yf_ (F:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Burkholderia pseudomallei [TaxId: 272560]
(2)
1a
d2x3ya_
A:
1b
d2x3yg_
G:
1c
d2x3yh_
H:
1d
d2x3yb_
B:
1e
d2x3yc_
C:
1f
d2x3yd_
D:
1g
d2x3ye_
E:
1h
d2x3yf_
F:
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CATH Domains
(1, 7)
Info
all CATH domains
1a: CATH_2x3yB00 (B:3-195)
1b: CATH_2x3yD00 (D:3-195)
1c: CATH_2x3yE00 (E:3-195)
1d: CATH_2x3yC00 (C:4-195)
1e: CATH_2x3yF00 (F:4-195)
1f: CATH_2x3yG00 (G:4-195)
1g: CATH_2x3yH00 (H:4-195)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Burkholderia pseudomallei. Organism_taxid: 272560. Strain: k96243.
(1)
1a
2x3yB00
B:3-195
1b
2x3yD00
D:3-195
1c
2x3yE00
E:3-195
1d
2x3yC00
C:4-195
1e
2x3yF00
F:4-195
1f
2x3yG00
G:4-195
1g
2x3yH00
H:4-195
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_SIS_2_2x3yH01 (H:7-150)
1b: PFAM_SIS_2_2x3yH02 (H:7-150)
1c: PFAM_SIS_2_2x3yH03 (H:7-150)
1d: PFAM_SIS_2_2x3yH04 (H:7-150)
1e: PFAM_SIS_2_2x3yH05 (H:7-150)
1f: PFAM_SIS_2_2x3yH06 (H:7-150)
1g: PFAM_SIS_2_2x3yH07 (H:7-150)
1h: PFAM_SIS_2_2x3yH08 (H:7-150)
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Clan
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SIS
(53)
Family
:
SIS_2
(6)
Burkholderia pseudomallei (Pseudomonas pseudomallei)
(2)
1a
SIS_2-2x3yH01
H:7-150
1b
SIS_2-2x3yH02
H:7-150
1c
SIS_2-2x3yH03
H:7-150
1d
SIS_2-2x3yH04
H:7-150
1e
SIS_2-2x3yH05
H:7-150
1f
SIS_2-2x3yH06
H:7-150
1g
SIS_2-2x3yH07
H:7-150
1h
SIS_2-2x3yH08
H:7-150
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Asym.Unit (510 KB)
Header - Asym.Unit
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