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(-) Description

Title :  BACTERIAL ACTIN MREB ASSEMBLES IN COMPLEX WITH CELL SHAPE PROTEIN RODZ
 
Authors :  F. Van Den Ent, C. M. Johnson, L. Persons, P. Deboer, J. Lowe
Date :  08 Oct 09  (Deposition) - 30 Jun 10  (Release) - 30 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,R,S
Biol. Unit 1:  A,R  (1x)
Biol. Unit 2:  B,S  (1x)
Keywords :  Structural Protein, Cell Wall Morphogenesis, Bacterial Cytoskeleton, Bacterial Actin, Helix-Turn-Helix Motif (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Van Den Ent, C. M. Johnson, L. Persons, P. De Boer, J. Lowe
Bacterial Actin Mreb Assembles In Complex With Cell Shape Protein Rodz.
Embo J. V. 29 1081 2010
PubMed-ID: 20168300  |  Reference-DOI: 10.1038/EMBOJ.2010.9

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Atcc: 43589D_5
    Chains: R, S
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Strain: C41
    Expression System Taxid: 562
    Fragment: HELIX_TURN_HELIX DOMAIN, RESIDUES 1-104
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: RODZ
 
Molecule 2 - ROD SHAPE-DETERMINING PROTEIN MREB
    Atcc: 43589D_5
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Strain: C41
    Expression System Taxid: 562
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: MREB

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABRS
Biological Unit 1 (1x): A R 
Biological Unit 2 (1x):  B S

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2WUS)

(-) Sites  (0, 0)

(no "Site" information available for 2WUS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WUS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WUS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WUS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WUS)

(-) Exons   (0, 0)

(no "Exon" information available for 2WUS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
 aligned with Q9WZ57_THEMA | Q9WZ57 from UniProtKB/TrEMBL  Length:336

    Alignment length:335
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     
         Q9WZ57_THEMA     2 LRKDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILKKLQGAG 336
               SCOP domains d2wusa1 A:2-140 Prokaryotic actin homolog MreB                                                                                             d2wusa2 A:141-336 Prokaryotic actin homolog MreB                                                                                                                                                     SCOP domains
               CATH domains 2wusA01 A:2-139,A:312-336  [code=3.30.420.40, no name defined]                                                                            ------2wusA02 A:146-176,A:254-311    -2wusA03 A:178-253 Actin; Chain A, domain 4                                  2wusA02 A:146-176,A:254-311                               2wusA01 A:2-139,A:312-336 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......eeee........eeee..eee......eee..hhhhhh...hhhhheee.........hhhhhhhhhhhhhhhhh........eeee......hhhhhhhhhhh.......eeee.hhhhhhhh............eeee.....eeeeee....eeeeeee....hhhhhhhhhhhhhhh.....hhhhhhhhhhh.....hhhhhh..eee............eee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eee........hhhhhhhhh....ee.................hhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wus A   2 LRKDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILKKLQGAG 336
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331     


Chain B from PDB  Type:PROTEIN  Length:333
 aligned with Q9WZ57_THEMA | Q9WZ57 from UniProtKB/TrEMBL  Length:336

    Alignment length:333
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333   
         Q9WZ57_THEMA     4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILKKLQGAG 336
               SCOP domains d2wusb1 B:4-140 Prokaryotic actin homolog MreB                                                                                           d2wusb2 B:141-336 Prokaryotic actin homolog MreB                                                                                                                                                     SCOP domains
               CATH domains 2wusB01 B:4-139,B:312-336  [code=3.30.420.40, no name defined]                                                                          ------2wusB02 B:146-176,B:254-311    -2wusB03 B:178-253 Actin; Chain A, domain 4                                  2wusB02 B:146-176,B:254-311                               2wusB01 B:4-139,B:312-336 CATH domains
           Pfam domains (1) MreB_Mbl-2wusB01 B:4-331                                                                                                                                                                                                                                                                                                                ----- Pfam domains (1)
           Pfam domains (2) MreB_Mbl-2wusB02 B:4-331                                                                                                                                                                                                                                                                                                                ----- Pfam domains (2)
         Sec.struct. author .ee....................................................................hhhhhhhhhhhhh.........eeee......hhhhhhhhhhh.......eeee.hhhhhhhh............eeee.....eeeeee....eeeeeee....hhhhhhhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhh.eee............eee...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..eee........hhhhhhhhh....ee.................hhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wus B   4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILKKLQGAG 336
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333   


Chain R from PDB  Type:PROTEIN  Length:87
 aligned with Q9X2H8_THEMA | Q9X2H8 from UniProtKB/TrEMBL  Length:191

    Alignment length:87
                                    11        21        31        41        51        61        71        81       
         Q9X2H8_THEMA     2 SEKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEEGKEEVAEEVE  88
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhhhhhh...hhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 2wus R   2 SEKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEEGKEEVAEEVE  88
                                    11        21        31        41        51        61        71        81       


Chain S from PDB  Type:PROTEIN  Length:82
 aligned with Q9X2H8_THEMA | Q9X2H8 from UniProtKB/TrEMBL  Length:191

    Alignment length:82
                                    12        22        32        42        52        62        72        82  
         Q9X2H8_THEMA     3 EKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEEGKEEVA  84
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------HTH_25-2wusS01 S:11-72                                        ------------ Pfam domains (1)
           Pfam domains (2) --------HTH_25-2wusS02 S:11-72                                        ------------ Pfam domains (2)
         Sec.struct. author hhhhhh.hhhhhhhhh...hhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 2wus S   3 EKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEEGKEEVA  84
                                    12        22        32        42        52        62        72        82
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)
(-)
Clan: HTH (544)

(-) Gene Ontology  (6, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9WZ57_THEMA | Q9WZ57)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0000902    cell morphogenesis    The developmental process in which the size or shape of a cell is generated and organized.

Chain R,S   (Q9X2H8_THEMA | Q9X2H8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9WZ57_THEMA | Q9WZ57: 1jce 1jcf 1jcg

(-) Related Entries Specified in the PDB File

1jce MREB FROM THERMOTOGA MARITIMA
1jcf MREB FROM THERMOTOGA MARITIMA, TRIGONAL
1jcg MREB FROM THERMOTOGA MARITIMA, AMPPNP