Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  MREB FROM THERMOTOGA MARITIMA
 
Authors :  F. Van Den Ent, L. A. Amos, J. Lowe
Date :  09 Jun 01  (Deposition) - 19 Sep 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Rod-Shape Determining, Mreb, Mbl, Actin, Hsp-70, Ftsz, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Van Den Ent, L. A. Amos, J. Lowe
Prokaryotic Origin Of The Actin Cytoskeleton.
Nature V. 413 39 2001
PubMed-ID: 11544518  |  Reference-DOI: 10.1038/35092500
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ROD SHAPE-DETERMINING PROTEIN MREB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0588
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1JCE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JCE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JCE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JCE)

(-) Exons   (0, 0)

(no "Exon" information available for 1JCE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
 aligned with Q9WZ57_THEMA | Q9WZ57 from UniProtKB/TrEMBL  Length:336

    Alignment length:333
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333   
         Q9WZ57_THEMA     4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILKKLQGAG 336
               SCOP domains d1jcea1 A:4-140 Prokaryotic actin homolog MreB                                                                                           d1jcea2 A:141-336 Prokaryotic actin homolog MreB                                                                                                                                                     SCOP domains
               CATH domains 1jceA01 A:4-139,A:312-328  [code=3.30.420.40, no name defined]                                                                          ------1jceA02 A:146-176,A:254-311    -1jceA03 A:178-253 Actin; Chain A, domain 4                                  1jceA02 A:146-176,A:254-311                               1jceA01          -------- CATH domains
               Pfam domains MreB_Mbl-1jceA01 A:4-331                                                                                                                                                                                                                                                                                                                ----- Pfam domains
         Sec.struct. author .eeeeee...eeeeee...eeeeeee..eeee.....eeeehhhhhh........eeee..ee..ee.hhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhhhhhh...eeeeeehhhhhhhhh.........eeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhh....hhhhhhheeeeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeehhhhh..hhhhhhhhhhh..eee.....hhhhhhhhhh..hhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jce A   4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNmIGKTPATIKAIRPmRDGVIADYTVALVmLRYFINKAKGGmNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPmAAAIGSNLNVEEPSGNmVVDIGGGTTEVAVISLGSIVTWESIRIAGDEmDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGmVLDKVNILKKLQGAG 336
                                    13        23        33        43       |53        63 |      73     |  83       |93       103       113       123       133       143      |153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333   
                                                                          51-MSE        65-MSE        79-MSE      91-MSE                                   133-MSE          150-MSE                         182-MSE                                                                                                                                    321-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Actin_ATPase (173)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9WZ57_THEMA | Q9WZ57)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0000902    cell morphogenesis    The developmental process in which the size or shape of a cell is generated and organized.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 1jce)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1jce)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1jce
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9WZ57_THEMA | Q9WZ57
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9WZ57_THEMA | Q9WZ57
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9WZ57_THEMA | Q9WZ57: 1jcf 1jcg 2wus

(-) Related Entries Specified in the PDB File

1jcf 1JCF CONTAINS THE SAME PROTEIN (WILD TYPE).
1jcg 1JCG CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP-PNP.