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(-) Description

Title :  STRUCTURE OF H1 DUCK ALBERT HEMAGGLUTININ WITH HUMAN RECEPTOR
 
Authors :  J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
Date :  01 Sep 09  (Deposition) - 29 Sep 09  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  H,I,J,K,L,M
Keywords :  Viral Protein, Envelope Protein, Glycoprotein, Lipoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
Structures Of Receptor Complexes Formed By Hemagglutinins From The Asian Influenza Pandemic Of 1957
Proc. Natl. Acad. Sci. Usa V. 106 17175 2009
PubMed-ID: 19805083  |  Reference-DOI: 10.1073/PNAS.0906849106

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1 CHAIN
    Chains: H, J, L
    Fragment: RESIDUES 18-343
    Organism Scientific: INFLUENZA A VIRUS (A/MALLARD/ALBERTA/35/1976(H1N1))
    Organism Taxid: 352520
 
Molecule 2 - HEMAGGLUTININ HA2 CHAIN
    Chains: I, K, M
    Fragment: RESIDUES 345-566
    Organism Scientific: INFLUENZA A VIRUS (A/MALLARD/ALBERTA/35/1976(H1N1))
    Organism Taxid: 352520

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : HIJKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SIA3Ligand/IonO-SIALIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR H:95 , GLY H:134 , VAL H:135 , THR H:136 , ALA H:137 , TRP H:153 , HIS H:183 , GLU H:190 , LEU H:194 , GLN H:226BINDING SITE FOR RESIDUE SIA H1328
2AC2SOFTWARETYR J:95 , GLY J:134 , VAL J:135 , THR J:136 , ALA J:137 , TRP J:153 , HIS J:183 , GLU J:190 , LEU J:194 , GLN J:226BINDING SITE FOR RESIDUE SIA J1328
3AC3SOFTWARETYR L:95 , GLY L:134 , VAL L:135 , THR L:136 , ALA L:137 , TRP L:153 , HIS L:183 , GLU L:190 , LEU L:194 , GLN L:226BINDING SITE FOR RESIDUE SIA L1328

(-) SS Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1H:8 -I:637
2H:47 -H:278
3H:59 -H:71
4H:94 -H:139
5H:282 -H:306
6J:8 -K:637
7J:47 -J:278
8J:59 -J:71
9J:94 -J:139
10J:282 -J:306
11K:644 -K:648
12L:8 -M:637
13L:47 -L:278
14L:59 -L:71
15L:94 -L:139
16L:282 -L:306

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WRH)

(-) Exons   (0, 0)

(no "Exon" information available for 2WRH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:322
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           HEMA_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSISSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPEVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhh_ H: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhH01 H:5-46,H:277-327                 2wr hH02 H:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhH01 H:5-46,H:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh H   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:322
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
         Q9WCE0_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhh_ H: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhH01 H:5-46,H:277-327                 2wr hH02 H:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhH01 H:5-46,H:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh H   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain I from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
           HEMA_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhi_ I: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhI00 I:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh I 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain I from PDB  Type:PROTEIN  Length:160
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         Q9WCE0_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhi_ I: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhI00 I:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh I 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain J from PDB  Type:PROTEIN  Length:322
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           HEMA_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSISSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPEVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhj_ J: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhJ01 J:5-46,J:277-327                 2wr hJ02 J:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhJ01 J:5-46,J:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh J   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain J from PDB  Type:PROTEIN  Length:322
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
         Q9WCE0_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhj_ J: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhJ01 J:5-46,J:277-327                 2wr hJ02 J:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhJ01 J:5-46,J:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh J   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain K from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
           HEMA_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhk_ K: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhK00 K:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh K 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain K from PDB  Type:PROTEIN  Length:160
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         Q9WCE0_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhk_ K: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhK00 K:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh K 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain L from PDB  Type:PROTEIN  Length:322
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           HEMA_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSISSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPEVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhl_ L: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhL01 L:5-46,L:277-327                 2wr hL02 L:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhL01 L:5-46,L:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh L   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain L from PDB  Type:PROTEIN  Length:322
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:327
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
         Q9WCE0_I76A4    18 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSLNGIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHETTKGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVPSIQSR 344
               SCOP domains d2wrhl_ L: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2wrhL01 L:5-46,L:277-327                 2wr hL02 L:47-276  [code=3.90.209.20, no name defined]                                                                                                                                                                                  2wrhL01 L:5-46,L:277-327                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........ee.......ee...eee.ee......eee.-....ee............hhhhh..........eee...............hhhhhhhhh....eeeeee..hhhhhh.....-...eeeee....ee....eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee.eeeeee.......ee....eeeee...............ee...........ee......eee.......---.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh L   5 DTICVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCSL-GIAPLQLGKCNVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFEIFPKASSWPNHET-KGVTAACSYSGASSFYRNLLWITKKGTSYPKLSKSYTNNKGKEVLVLWGVHHPPSVSEQQSLYQNADAYVSVGSSKYNRRFAPEIAARPKVRGQAGRMNYYWTLLDQGDTITFEATGNLIAPWYAFALNKGSDSGIITSDAPVHNCDTRCQTPHGALNSSLPFQNVHPITIGECPKYVKSTKLRMATGLRNVP---SR 327
                                    14        24        34       |45   | |  54        64        74        84        94       104       114       124       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323 |   | 
                                                                42|   49 |                                                                               132 |                                                                                                                                                                                             325 326 
                                                                 44     50                                                                                 133                                                                                                                                                                                                     


Chain M from PDB  Type:PROTEIN  Length:160
 aligned with HEMA_I76A4 | P26562 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
           HEMA_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhm_ M: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhM00 M:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
           Pfam domains (1) Hemagglutinin-2wrhM01 M:501-660                                                                                                                                  Pfam domains (1)
           Pfam domains (2) Hemagglutinin-2wrhM02 M:501-660                                                                                                                                  Pfam domains (2)
           Pfam domains (3) Hemagglutinin-2wrhM03 M:501-660                                                                                                                                  Pfam domains (3)
           Pfam domains (4) Hemagglutinin-2wrhM04 M:501-660                                                                                                                                  Pfam domains (4)
           Pfam domains (5) Hemagglutinin-2wrhM05 M:501-660                                                                                                                                  Pfam domains (5)
           Pfam domains (6) Hemagglutinin-2wrhM06 M:501-660                                                                                                                                  Pfam domains (6)
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh M 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660


Chain M from PDB  Type:PROTEIN  Length:160
 aligned with Q9WCE0_I76A4 | Q9WCE0 from UniProtKB/TrEMBL  Length:566

    Alignment length:160
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
         Q9WCE0_I76A4   345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 504
               SCOP domains d2wrhm_ M: automated matches                                                                                                                                     SCOP domains
               CATH domains 2wrhM00 M:501-660  [code=3.90.20.10, no name defined]                                                                                                            CATH domains
           Pfam domains (1) Hemagglutinin-2wrhM01 M:501-660                                                                                                                                  Pfam domains (1)
           Pfam domains (2) Hemagglutinin-2wrhM02 M:501-660                                                                                                                                  Pfam domains (2)
           Pfam domains (3) Hemagglutinin-2wrhM03 M:501-660                                                                                                                                  Pfam domains (3)
           Pfam domains (4) Hemagglutinin-2wrhM04 M:501-660                                                                                                                                  Pfam domains (4)
           Pfam domains (5) Hemagglutinin-2wrhM05 M:501-660                                                                                                                                  Pfam domains (5)
           Pfam domains (6) Hemagglutinin-2wrhM06 M:501-660                                                                                                                                  Pfam domains (6)
         Sec.struct. author ....................................hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wrh M 501 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITSKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLRNNAKEIGNGCFEFYHKCDDECMESVKNGTYDYP 660
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Hemagglutinin] (58)

(-) Gene Ontology  (17, 34)

Asymmetric/Biological Unit(hide GO term definitions)
Chain H,I,J,K,L,M   (Q9WCE0_I76A4 | Q9WCE0)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain H,I,J,K,L,M   (HEMA_I76A4 | P26562)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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  2wrh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2WRH)

(-) Related Entries Specified in the PDB File

2wr0 STRUCTURES OF INFLUENZA H2 HEMAGGLUTININS
2wr1 STRUCTURE OF INFLUENZA H2 HEMAGGLUTININ WITH HUMAN RECEPTOR
2wr2 STRUCTURE OF INFLUENZA H2 AVIAN HEMAGGLUTININ WITH AVIAN RECEPTOR
2wr3 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ WITH AVIAN RECEPTOR
2wr4 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ WITH HUMAN RECEPTOR
2wr5 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ
2wr7 THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrb THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ WITH AVIAN RECEPTOR
2wrc THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ
2wrd STRUCTURE OF H2 JAPAN HEMAGGLUTININ
2wre STRUCTURE OF H2 JAPAN HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrf STRUCTURE OF H2 AVIAN JENA HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrg STRUCTURE OF H1 1918 HEMAGGLUTININ WITH HUMAN RECEPTOR