Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURES OF INFLUENZA H2 HEMAGGLUTININS
 
Authors :  J. Liu, D. Stevens, L. Haire, P. Coombs, R. Russell, S. Gamblin, J. Skehel
Date :  28 Aug 09  (Deposition) - 29 Sep 09  (Release) - 20 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Viral Protein, Glycoprotein, Envelope Protein, Liproprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
From The Cover: Structures Of Receptor Complexes Formed By Hemagglutinins From The Asian Influenza Pandemic Of 1957.
Proc. Natl. Acad. Sci. Usa V. 106 17175 2009
PubMed-ID: 19805083  |  Reference-DOI: 10.1073/PNAS.0906849106

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, B, C
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 11309

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:476 , ASN A:479 , SER A:480 , ASN A:483 , HOH A:2151BINDING SITE FOR RESIDUE NAG A1499
02AC2SOFTWAREASN C:168 , TRP C:239 , VAL C:241 , HOH C:2158BINDING SITE FOR RESIDUE NAG C1497
03AC3SOFTWAREASN A:168 , TRP A:239 , VAL A:241 , HOH A:2152 , HOH A:2153 , HOH A:2154BINDING SITE FOR RESIDUE NAG A1500
04AC4SOFTWAREASN B:168 , TRP B:239 , VAL B:241 , NAG B:1500BINDING SITE FOR RESIDUE NAG B1499
05AC5SOFTWARETRP B:239 , NAG B:1499BINDING SITE FOR RESIDUE NAG B1500
06AC6SOFTWAREGLU B:476 , ASN B:479 , ASN B:483 , THR B:485 , NAG B:1502BINDING SITE FOR RESIDUE NAG B1501
07AC7SOFTWAREGLU B:476 , NAG B:1501 , BMA B:1503 , HOH B:2159BINDING SITE FOR RESIDUE NAG B1502
08AC8SOFTWARENAG B:1502 , BMA B:1504 , HOH B:2160BINDING SITE FOR RESIDUE BMA B1503
09AC9SOFTWAREBMA B:1503BINDING SITE FOR RESIDUE BMA B1504
10BC1SOFTWAREASP C:124 , GLU C:476 , ASN C:479 , ASN C:483 , THR C:485 , NAG C:1499BINDING SITE FOR RESIDUE NAG C1498
11BC2SOFTWARENAG C:1498 , BMA C:1500BINDING SITE FOR RESIDUE NAG C1499
12BC3SOFTWARENAG C:1499 , MAN C:1501 , HOH C:2159BINDING SITE FOR RESIDUE BMA C1500
13BC4SOFTWARELYS C:164 , BMA C:1500 , HOH C:2160 , HOH C:2161 , HOH C:2162BINDING SITE FOR RESIDUE MAN C1501

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:8 -A:466
2A:46 -A:277
3A:59 -A:71
4A:94 -A:138
5A:281 -A:305
6A:473 -A:477
7B:8 -B:466
8B:46 -B:277
9B:59 -B:71
10B:94 -B:138
11B:281 -B:305
12B:473 -B:477
13C:8 -C:466
14C:46 -C:277
15C:59 -C:71
16C:281 -C:305
17C:473 -C:477

(-) Cis Peptide Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1Leu A:141 -Asp A:142
2Ser A:361 -Gly A:362
3Thr B:113 -His B:114
4Leu B:141 -Asp B:142
5Ser B:361 -Gly B:362
6Glu B:492 -Glu B:493
7Thr C:113 -His C:114
8Leu C:141 -Asp C:142
9Ser C:361 -Gly C:362

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WR0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WR0)

(-) Exons   (0, 0)

(no "Exon" information available for 2WR0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
 aligned with D0VWP8_9ORTO | D0VWP8 from UniProtKB/TrEMBL  Length:509

    Alignment length:494
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505    
         D0VWP8_9ORTO    16 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKAA 509
               SCOP domains d2wr0a1 A:5-325 automated matches                                                                                                                                                                                                                                                                                                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wr0A01 A:5-51,A:273-498                       2wr0A02 A:52-272  [code=3.90.209.20, no name defined]                                                                                                                                                                        2wr0A01 A:5-51,A:273-498  [code=3.90.20.10, no name d    efined]                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........ee.......ee...eee.ee......eeee.....ee...........................eee...............hhhhhhhhh.....ee.....hhhhh........hhhhh..........eee..........eeeeee.....eeeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee....ee........ee....eeeeee..............ee...........ee......eee........----........................eee.........hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh...hhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wr0 A   5 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVPQ----GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKAA 498
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324|    | 334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494    
                                                                                                                                                                                                                                                                                                                                                          325  330                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:491
 aligned with D0VWP8_9ORTO | D0VWP8 from UniProtKB/TrEMBL  Length:509

    Alignment length:494
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505    
         D0VWP8_9ORTO    16 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKAA 509
               SCOP domains d2wr0b1 B:5-326 automated matches                                                                                                                                                                                                                                                                                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wr0B01 B:5-51,B:273-498                       2wr0B02 B:52-272  [code=3.90.209.20, no name defined]                                                                                                                                                                        2wr0B01 B:5-51,B:273-498  [code=3.90.20.10, no name de   fined]                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........ee.......ee...eee.ee......eeee.....ee............hhhhh..........eee...............hhhhhhhhh..eeeee.....hhhhh........hhhhh..........eee..........eeeeee......eeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee....eeee......ee....eeeeee..............ee...........ee......eee.........---........................eee.........hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wr0 B   5 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVPQI---GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKAA 498
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324 |   | 334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494    
                                                                                                                                                                                                                                                                                                                                                           326 330                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:486
 aligned with D0VWP8_9ORTO | D0VWP8 from UniProtKB/TrEMBL  Length:509

    Alignment length:491
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506 
         D0VWP8_9ORTO    17 QICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVPQIESRGLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESK 507
               SCOP domains d2wr0c1 C:6-324 automated matches                                                                                                                                                                                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wr0C01 C:6-51,C:273-496                      2wr0C02 C:52-272  [code=3.90.209.20, no name defined]                                                                                                                                                                        2wr0C01 C:6-51,C:273-496  [code=3.90.20.10, no name      defined]                                                                                                                                                                CATH domains
           Pfam domains (1) -Hemagglutinin-2wr0C01 C:7-496                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) -Hemagglutinin-2wr0C02 C:7-496                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (2)
           Pfam domains (3) -Hemagglutinin-2wr0C03 C:7-496                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Pfam domains (3)
         Sec.struct. author .ee..........ee.......ee...eee.ee......eeee.....ee............hhhhhhhh...ee..eee...............hhhhhhhhhh.ee.ee.....hhhhh........hhhhh..........eee..........eeeeee......eeeeeeee...hhhhhhhhhh.....eee......eee................eeeeeeee....eeeeee....eee....ee........ee....eeeeee..............ee...........ee......eee.......-----........................ee..........hhhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wr0 C   6 QICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIVEKENPVNGLCYPGSFNDYEELKHLITSVTHFEKVKILPRDQWTQHTTTGGSRACAVLDNPSFFRNMVWLTKKGSNYPIAKRSYNNTSGEQMLIIWGIHHPNDDAEQRTLYQNVGTYVSVGTSTLNKRSIPEIATRPKVNGQGGRMEFSWTLLETWDVINFESTGNLIAPEYGFKISKRGSSGIMKTEKTLENCETKCQTPLGAINTTLPFHNIHPLTIGECPKYVKSDRLVLATGLRNVP-----GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESK 496
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315        |-    |  335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495 
                                                                                                                                                                                                                                                                                                                                                        324   330
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Hemagglutinin] (58)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (D0VWP8_9ORTO | D0VWP8)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu B:492 - Glu B:493   [ RasMol ]  
    Leu A:141 - Asp A:142   [ RasMol ]  
    Leu B:141 - Asp B:142   [ RasMol ]  
    Leu C:141 - Asp C:142   [ RasMol ]  
    Ser A:361 - Gly A:362   [ RasMol ]  
    Ser B:361 - Gly B:362   [ RasMol ]  
    Ser C:361 - Gly C:362   [ RasMol ]  
    Thr B:113 - His B:114   [ RasMol ]  
    Thr C:113 - His C:114   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wr0
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  D0VWP8_9ORTO | D0VWP8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  D0VWP8_9ORTO | D0VWP8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0VWP8_9ORTO | D0VWP8: 2wr1 2wr2

(-) Related Entries Specified in the PDB File

2wr1 STRUCTURE OF INFLUENZA H2 HEMAGGLUTININ WITH HUMAN RECEPTOR
2wr2 STRUCTURE OF INFLUENZA H2 AVIAN HEMAGGLUTININ WITH AVIAN RECEPTOR
2wr3 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ WITH AVIAN RECEPTOR
2wr4 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ WITH HUMAN RECEPTOR
2wr5 STRUCTURE OF INFLUENZA H2 DUCK ONTARIO HEMAGGLUTININ
2wr7 THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrb THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ WITH AVIAN RECEPTOR
2wrc THE STRUCTURE OF INFLUENZA H2 HUMAN SINGAPORE HEMAGGLUTININ
2wrd STRUCTURE OF H2 JAPAN HEMAGGLUTININ
2wre STRUCTURE OF H2 JAPAN HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrf STRUCTURE OF H2 AVIAN JENA HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrg STRUCTURE OF H1 1918 HEMAGGLUTININ WITH HUMAN RECEPTOR
2wrh STRUCTURE OF H1 DUCK ALBERT HEMAGGLUTININ WITH HUMAN RECEPTOR