2W8B - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PROCESSED TOLB IN COMPLEX WITH PAL

Authors :   A. Sharma, D. A. Bonsor, C. Kleanthous

Date :   15 Jan 09 (Deposition) - 17 Feb 09 (Release) - 27 Oct 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,H  (1x)
Biol. Unit 2: D,E  (1x)
Biol. Unit 3: F,G  (1x)
Biol. Unit 4: B,C  (1x)

Keywords :   Protein Transport Membrane Protein Complex, Tol, Pal, Tolb, Membrane, Palmitate, Periplasm, Bacteriocin Transport, Transport Protein/Lipoprotein, Cell Outer Membrane, Transport, Lipoprotein, Cell Membrane, Outer Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. A. Bonsor, O. Hecht, M. Vankemmelbeke, A. Sharma, A. M. Krachler, N. G. Housden, K. J. Lilly, R. James, G. R. Moore, C. Kleanthous
Allosteric Beta-Propeller Signalling In Tolb And Its Manipulation By Translocating Colicins.
Embo J. V. 28 2846 2009
PubMed-ID: 19696740 | Reference-DOI: 10.1038/EMBOJ.2009.224

Molecule 1 - PROTEIN TOLB
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	TOL B

Molecule 2 - PROTEIN TOLB
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	TOL B

Molecule 3 - PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN
	Chains	:	C, E, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 65-173
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A							H
Biological Unit 2 (1x)	:				D	E
Biological Unit 3 (1x)	:						F	G
Biological Unit 4 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 19)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	GOL	7	Ligand/Ion	GLYCEROL
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:64 , SER A:65 , PHE A:163 , TYR A:187 , MET A:388 , TRP A:426 , HOH A:2351 , HOH A:2352	BINDING SITE FOR RESIDUE SO4 A1431
02	AC2	SOFTWARE	ARG A:244 , HOH A:2354 , LYS H:130 , ILE H:145	BINDING SITE FOR RESIDUE SO4 A1432
03	AC3	SOFTWARE	GLY A:286 , ARG A:287	BINDING SITE FOR RESIDUE SO4 A1433
04	AC4	SOFTWARE	GLU A:22 , ARG A:24 , ASN A:191 , GLN A:192	BINDING SITE FOR RESIDUE GOL A1434
05	AC5	SOFTWARE	ASP A:150 , GLY A:161 , ALA A:162 , PHE A:163 , ARG A:164 , THR A:165 , TYR A:429 , LEU A:430	BINDING SITE FOR RESIDUE ACT A1435
06	AC6	SOFTWARE	ALA B:89 , GLY B:286 , ARG B:287	BINDING SITE FOR RESIDUE SO4 B1431
07	AC7	SOFTWARE	LYS B:213 , ARG B:237 , HOH B:2311 , HOH B:2312	BINDING SITE FOR RESIDUE SO4 B1432
08	AC8	SOFTWARE	SER B:65 , PHE B:163 , TYR B:187 , ASN B:385 , THR B:387 , HOH B:2027 , HOH B:2313 , HOH B:2314	BINDING SITE FOR RESIDUE GOL B1433
09	AC9	SOFTWARE	GLU B:22 , ARG B:24 , TYR B:190 , ASN B:191 , GLN B:192	BINDING SITE FOR RESIDUE GOL B1434
10	BC1	SOFTWARE	ASP B:150 , GLY B:161 , ALA B:162 , PHE B:163 , ARG B:164 , THR B:165 , TYR B:429 , LEU B:430	BINDING SITE FOR RESIDUE ACT B1435
11	BC2	SOFTWARE	ARG B:244 , LYS C:130 , ILE C:143 , SER C:144 , ILE C:145 , HOH C:2035	BINDING SITE FOR RESIDUE GOL C1174
12	BC3	SOFTWARE	SER D:29 , GLY D:30 , VAL D:31 , ASP D:32 , HOH D:2315 , HOH D:2316	BINDING SITE FOR RESIDUE SO4 D1431
13	BC4	SOFTWARE	GLU D:22 , ARG D:24 , GLY D:189 , ASN D:191 , GLN D:192	BINDING SITE FOR RESIDUE GOL D1432
14	BC5	SOFTWARE	ALA D:89 , ASP D:285 , GLY D:286 , ARG D:287 , GLN D:308	BINDING SITE FOR RESIDUE GOL D1433
15	BC6	SOFTWARE	ASP D:150 , GLY D:161 , ALA D:162 , PHE D:163 , ARG D:164 , THR D:165 , TYR D:429 , LEU D:430	BINDING SITE FOR RESIDUE ACT D1434
16	BC7	SOFTWARE	GLY F:56 , ILE F:57 , ARG F:142 , TYR F:190 , HOH F:2134	BINDING SITE FOR RESIDUE SO4 F1431
17	BC8	SOFTWARE	GLU F:22 , ARG F:24 , ASN F:191 , GLN F:192	BINDING SITE FOR RESIDUE GOL F1432
18	BC9	SOFTWARE	LYS D:213 , ARG D:237 , LYS G:165 , HOH G:2059 , HOH G:2060	BINDING SITE FOR RESIDUE SO4 G1175
19	CC1	SOFTWARE	ASP H:76 , ALA H:109 , ASP H:110 , LEU H:121 , ARG H:125 , ARG H:167	BINDING SITE FOR RESIDUE ACT H1175

(no "SS Bond" information available for 2W8B)

Asymmetric Unit

No.	Residues
1	Val B:31	-	Asp B:32

(no "SAP(SNP)/Variant" information available for 2W8B)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPA_1	PS01068	OmpA-like domain.	PAL_ECOLI	105-149	4	C:105-149 E:105-149 G:105-149 H:105-149

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPA_1	PS01068	OmpA-like domain.	PAL_ECOLI	105-149	1	- - - H:105-149

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPA_1	PS01068	OmpA-like domain.	PAL_ECOLI	105-149	1	- E:105-149 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPA_1	PS01068	OmpA-like domain.	PAL_ECOLI	105-149	1	- - G:105-149 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPA_1	PS01068	OmpA-like domain.	PAL_ECOLI	105-149	1	C:105-149 - - -

(no "Exon" information available for 2W8B)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:409
 aligned with TOLB_ECOLI | P0A855 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:409
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         
           TOLB_ECOLI    22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
               SCOP domains d2w8ba1 A:22-161 automated matches                                                                                                          d2w8ba2 A:162-430 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2w8bA01 A:22-164  [code=3.40.50.10070, no name defined]                                                                                        2w8bA02 A:165-430 TolB, C-terminal domain                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeeee...ee........hhhhhhhhhhhhh..eee.hhhhh..........hhhhhhh....eeeeeeeee.....eeeeeeeee.......eeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eeeeeee......eeeeee...eeeeee.....eeeeee......eeeeee.....eeeee.....eeeeee.....eeeeee......eeeeee.....eee.......eeeeee.....eeeeee......eeeeee......ee......eeeeeee.....eeeeeeee..eeeeeeee.....eee.......eeeee.....eeeeeeee..eeeeeeee.....eee......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w8b A  22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVLYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421

Chain B from PDB  Type:PROTEIN  Length:409
 aligned with TOLB_ECOLI | P0A855 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:409
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         
           TOLB_ECOLI    22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
               SCOP domains d2w8bb1 B:22-161 automated matches                                                                                                          d2w8bb2 B:162-430 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2w8bB01 B:22-164  [code=3.40.50.10070, no name defined]                                                                                        2w8bB02 B:165-430 TolB, C-terminal domain                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeeee...ee........hhhhhhhhhhhhh..eee.hhhhh..........hhhhhhh....eeeeeeeee.....eeeeeeeee.......eeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eeeeeee......eeeeee...eeeeee.....eeeeee......eeeeee.....eeeee.....eeeeee.....eeeeee......eeeeee.....eee.......eeeeee.....eeeeee......eeeeee......ee......eeeeeee.....eeeeeeee..eeeeeeee.....eee.......eeeee.....eeeeeeee..eeeeeeee.....eee......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w8b B  22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421

Chain C from PDB  Type:PROTEIN  Length:104
 aligned with PAL_ECOLI | P0A912 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:106
                                    77        87        97       107       117       127       137       147       157       167      
            PAL_ECOLI    68 NNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY 173
               SCOP domains d2w8bc_ C: automated matches                                                                               SCOP domains
               CATH domains 2w8bC00 C:68-173 OmpA-like                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee........hhhhhhhhhhhhhhh..--...eeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------OMPA_1  PDB: C:105-149 UniProt: 105-149      ------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 2w8b C  68 NNIVYFDLDKYDIRSDFAQMLDAHANFLRS--SYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY 173
                                    77        87        97  |    107       117       127       137       147       157       167      
                                                        97  |                                                                         
                                                          100

Chain D from PDB  Type:PROTEIN  Length:409
 aligned with TOLB_ECOLI | P0A855 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:409
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         
           TOLB_ECOLI    22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
               SCOP domains d2w8bd1 D:22-161 automated matches                                                                                                          d2w8bd2 D:162-430 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2w8bD01 D:22-164  [code=3.40.50.10070, no name defined]                                                                                        2w8bD02 D:165-430 TolB, C-terminal domain                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeehhhhheeeee...ee........hhhhhhhhhhhhh..eee.hhhhh.....hhhhhhhhhhhh....eeeeeeeee.....eeeeeeeee.......eeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eeeeeee......eeeeee...eeeeee.....eeeeee......eeeeee.....eeeee.....eeeeee.....eeeeee......eeeeee.....eee.......eeeeee.....eeeeee......eeeeee......ee.......eeeeee.....eeeeeeee..eeeeeeee.....eee.......eeeee.....eeeeeeee..eeeeeeee.....eee......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w8b D  22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421

Chain E from PDB  Type:PROTEIN  Length:107
 aligned with PAL_ECOLI | P0A912 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:107
                                                                                                                                   173 
                                    77        87        97       107       117       127       137       147       157       167     | 
            PAL_ECOLI    68 NNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY-   -
               SCOP domains d2w8be_ E: automated matches                                                                                SCOP domains
               CATH domains 2w8bE00 E:68-174 OmpA-like                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee........hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee.........hhhhhhhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------OMPA_1  PDB: E:105-149 UniProt: 105-149      ------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2w8b E  68 NNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYL 174
                                    77        87        97       107       117       127       137       147       157       167

Chain F from PDB  Type:PROTEIN  Length:409
 aligned with TOLB_ECOLI | P0A855 from UniProtKB/Swiss-Prot  Length:430

    Alignment length:409
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         
           TOLB_ECOLI    22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
               SCOP domains d2w8bf1 F:22-161 automated matches                                                                                                          d2w8bf2 F:162-430 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2w8bF01 F:22-164  [code=3.40.50.10070, no name defined]                                                                                        2w8bF02 F:165-430 TolB, C-terminal domain                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeehhhhheeeee...ee........hhhhhhhhhhhhh..eee.hhhhh.....hhhhhhhhhhhh....eeeeeeeee.....eeeeeeeee.......eeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eeeeeee......eeeeee...eeeeee.....eeeeee......eeeeee.....eeeee.....eeeeee.....eeeeee......eeeeee.....eee.......eeeeee.....eeeeee......eeeeee......ee......eeeeeee.....eeeeeeee..eeeeeeee.....eee.......eeeee.....eeeeeeee..eeeeeeee.....eee......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w8b F  22 EVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 430
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421

Chain G from PDB  Type:PROTEIN  Length:108
 aligned with PAL_ECOLI | P0A912 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:108
                                                                                                                                    173 
                                    76        86        96       106       116       126       136       146       156       166      | 
            PAL_ECOLI    67 QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY-   -
               SCOP domains d2w8bg_ G: automated matches                                                                                 SCOP domains
               CATH domains 2w8bG00 G:67-174 OmpA-like                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------OMPA_1  PDB: G:105-149 UniProt: 105-149      ------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2w8b G  67 QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYL 174
                                    76        86        96       106       116       126       136       146       156       166

Chain H from PDB  Type:PROTEIN  Length:108
 aligned with PAL_ECOLI | P0A912 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:108
                                                                                                                                    173 
                                    76        86        96       106       116       126       136       146       156       166      | 
            PAL_ECOLI    67 QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY-   -
               SCOP domains d2w8bh_ H: automated matches                                                                                 SCOP domains
               CATH domains 2w8bH00 H:67-174 OmpA-like                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------OMPA_1  PDB: H:105-149 UniProt: 105-149      ------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2w8b H  67 QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYL 174
                                    76        86        96       106       116       126       136       146       156       166

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: TolB, C-terminal domain (7)

Family: TolB, C-terminal domain (7)

Protein domain: automated matches (3)

Escherichia coli [TaxId: 562] (2)

1a	d2w8ba2	A:162-430
1b	d2w8bb2	B:162-430
1c	d2w8bd2	D:162-430
1d	d2w8bf2	F:162-430

Class: Alpha and beta proteins (a+b) (23004)

Fold: Bacillus chorismate mutase-like (324)

Superfamily: OmpA-like (17)

Family: OmpA-like (6)

Protein domain: automated matches (3)

Escherichia coli [TaxId: 562] (2)

2a	d2w8bc_	C:
2b	d2w8be_	E:
2c	d2w8bg_	G:
2d	d2w8bh_	H:

Class: Alpha and beta proteins (a/b) (23833)

Fold: Anticodon-binding domain-like (97)

Superfamily: TolB, N-terminal domain (7)

Family: automated matches (3)

Protein domain: automated matches (3)

Escherichia coli [TaxId: 562] (2)

3a	d2w8ba1	A:22-161
3b	d2w8bb1	B:22-161
3c	d2w8bd1	D:22-161
3d	d2w8bf1	F:22-161

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: 60s Ribosomal Protein L30; Chain: A; (235)

Homologous Superfamily: OmpA-like (7)

Escherichia coli. Organism_taxid: 562. (2)

1a	2w8bG00	G:67-174
1b	2w8bH00	H:67-174
1c	2w8bE00	E:68-174
1d	2w8bC00	C:68-173

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.10070, no name defined] (6)

Escherichia coli. Organism_taxid: 562. (4)

2a	2w8bA01	A:22-164
2b	2w8bB01	B:22-164
2c	2w8bD01	D:22-164
2d	2w8bF01	F:22-164

Class: Mainly Beta (13760)

Architecture: 6 Propellor (215)

Topology: Neuraminidase (215)

Homologous Superfamily: TolB, C-terminal domain (42)

Escherichia coli. Organism_taxid: 562. (4)

3a	2w8bB02	B:165-430
3b	2w8bD02	D:165-430
3c	2w8bF02	F:165-430
3d	2w8bA02	A:165-430

(no "Pfam Domain" information available for 2W8B)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,F (TOLB_ECOLI | P0A855)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043213	bacteriocin transport	The directed movement of a bacteriocin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain.
	GO:0071237	cellular response to bacteriocin	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacteriocin stimulus. A bacteriocin is a protein substance released by certain bacteria that kills but does not lyse closely related strains of bacteria. Specific bacteriocins attach to specific receptors on cell walls and induce specific metabolic block, e.g. cessation of nucleic acid or protein synthesis of oxidative phosphorylation.
	GO:0017038	protein import	The targeting and directed movement of proteins into a cell or organelle. Not all import involves an initial targeting event.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain C,E,G,H (PAL_ECOLI | P0A912)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0031246	intrinsic component of periplasmic side of cell outer membrane	The component of the cell outer membrane consisting of the gene products that that penetrate the periplasmic side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	2w8b
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	TOLB_ECOLI \| P0A855
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UniProtKB/Swiss-Prot
	PAL_ECOLI \| P0A912	:	1oap 2hqs
	TOLB_ECOLI \| P0A855	:	1c5k 1crz 2hqs 2ivz 3iax

1c5k	THE STRUCTURE OF TOLB, AN ESSENTIAL COMPONENT OF THE TOL-DEPENDENT TRANSLOCATION SYSTEM AND ITS INTERACTIONS WITH THE TRANSLOCATION DOMAIN OF COLICIN E9
1crz	CRYSTAL STRUCTURE OF THE E. COLI TOLB PROTEIN
1oap	MAD STRUCTURE OF THE PERIPLASMIQUE DOMAIN OF THE ESCHERICHIA COLI PAL PROTEIN
2ivz	STRUCTURE OF TOLB IN COMPLEX WITH A PEPTIDE OF THE COLICIN E9 T-DOMAIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 19)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

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SCOP Domains (3, 12)

CATH Domains (3, 12)

Pfam Domains (0, 0)

Gene Ontology (14, 16)

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