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2W8B
Biol. Unit 2
Info
Asym.Unit (357 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (93 KB)
Biol.Unit 4 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROCESSED TOLB IN COMPLEX WITH PAL
Authors
:
A. Sharma, D. A. Bonsor, C. Kleanthous
Date
:
15 Jan 09 (Deposition) - 17 Feb 09 (Release) - 27 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,H (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: F,G (1x)
Biol. Unit 4: B,C (1x)
Keywords
:
Protein Transport Membrane Protein Complex, Tol, Pal, Tolb, Membrane, Palmitate, Periplasm, Bacteriocin Transport, Transport Protein/Lipoprotein, Cell Outer Membrane, Transport, Lipoprotein, Cell Membrane, Outer Membrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Bonsor, O. Hecht, M. Vankemmelbeke, A. Sharma, A. M. Krachler, N. G. Housden, K. J. Lilly, R. James, G. R. Moore, C. Kleanthous
Allosteric Beta-Propeller Signalling In Tolb And Its Manipulation By Translocating Colicins.
Embo J. V. 28 2846 2009
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: BC3 (SOFTWARE)
2: BC4 (SOFTWARE)
3: BC5 (SOFTWARE)
4: BC6 (SOFTWARE)
5: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC3
SOFTWARE
SER D:29 , GLY D:30 , VAL D:31 , ASP D:32 , HOH D:2315 , HOH D:2316
BINDING SITE FOR RESIDUE SO4 D1431
2
BC4
SOFTWARE
GLU D:22 , ARG D:24 , GLY D:189 , ASN D:191 , GLN D:192
BINDING SITE FOR RESIDUE GOL D1432
3
BC5
SOFTWARE
ALA D:89 , ASP D:285 , GLY D:286 , ARG D:287 , GLN D:308
BINDING SITE FOR RESIDUE GOL D1433
4
BC6
SOFTWARE
ASP D:150 , GLY D:161 , ALA D:162 , PHE D:163 , ARG D:164 , THR D:165 , TYR D:429 , LEU D:430
BINDING SITE FOR RESIDUE ACT D1434
5
BC9
SOFTWARE
LYS D:213 , ARG D:237 , LYS G:165 , HOH G:2059 , HOH G:2060
BINDING SITE FOR RESIDUE SO4 G1175
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: OMPA_1 (E:105-149)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPA_1
PS01068
OmpA-like domain.
PAL_ECOLI
105-149
1
-
E:105-149
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2w8ba2 (A:162-430)
1b: SCOP_d2w8bb2 (B:162-430)
1c: SCOP_d2w8bd2 (D:162-430)
1d: SCOP_d2w8bf2 (F:162-430)
2a: SCOP_d2w8bc_ (C:)
2b: SCOP_d2w8be_ (E:)
2c: SCOP_d2w8bg_ (G:)
2d: SCOP_d2w8bh_ (H:)
3a: SCOP_d2w8ba1 (A:22-161)
3b: SCOP_d2w8bb1 (B:22-161)
3c: SCOP_d2w8bd1 (D:22-161)
3d: SCOP_d2w8bf1 (F:22-161)
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Classes
(
)
(
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Folds
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)
(
)
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
TolB, C-terminal domain
(7)
Family
:
TolB, C-terminal domain
(7)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(2)
1a
d2w8ba2
A:162-430
1b
d2w8bb2
B:162-430
1c
d2w8bd2
D:162-430
1d
d2w8bf2
F:162-430
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
OmpA-like
(17)
Family
:
OmpA-like
(6)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(2)
2a
d2w8bc_
C:
2b
d2w8be_
E:
2c
d2w8bg_
G:
2d
d2w8bh_
H:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
TolB, N-terminal domain
(7)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(2)
3a
d2w8ba1
A:22-161
3b
d2w8bb1
B:22-161
3c
d2w8bd1
D:22-161
3d
d2w8bf1
F:22-161
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2w8bG00 (G:67-174)
1b: CATH_2w8bH00 (H:67-174)
1c: CATH_2w8bE00 (E:68-174)
1d: CATH_2w8bC00 (C:68-173)
2a: CATH_2w8bA01 (A:22-164)
2b: CATH_2w8bB01 (B:22-164)
2c: CATH_2w8bD01 (D:22-164)
2d: CATH_2w8bF01 (F:22-164)
3a: CATH_2w8bB02 (B:165-430)
3b: CATH_2w8bD02 (D:165-430)
3c: CATH_2w8bF02 (F:165-430)
3d: CATH_2w8bA02 (A:165-430)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
OmpA-like
(7)
Escherichia coli. Organism_taxid: 562.
(2)
1a
2w8bG00
G:67-174
1b
2w8bH00
H:67-174
1c
2w8bE00
E:68-174
1d
2w8bC00
C:68-173
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10070, no name defined]
(6)
Escherichia coli. Organism_taxid: 562.
(4)
2a
2w8bA01
A:22-164
2b
2w8bB01
B:22-164
2c
2w8bD01
D:22-164
2d
2w8bF01
F:22-164
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Escherichia coli. Organism_taxid: 562.
(4)
3a
2w8bB02
B:165-430
3b
2w8bD02
D:165-430
3c
2w8bF02
F:165-430
3d
2w8bA02
A:165-430
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (357 KB)
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Biol.Unit 1 (93 KB)
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Biol.Unit 3 (93 KB)
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