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(-) Description

Title :  CRYSTAL STRUCTURE OF A BONSAI VERSION OF THE HUMAN NDC80 COMPLEX
 
Authors :  C. Ciferri, S. Pasqualato, G. Dos Reis, E. Screpanti, A. Maiolica, J. P J. G. De Luca, P. De Wulf, M. Salek, J. Rappsilber, C. A. Moores, E. D. S A. Musacchio
Date :  17 Oct 07  (Deposition) - 13 May 08  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.88
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Mitosis, Centromere, Cell Cycle, Microtubule, Kinetochore, Cell Division, Calponin Homology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Ciferri, S. Pasqualato, E. Screpanti, G. Varetti, S. Santaguida, G. Dos Reis, A. Maiolica, J. Polka, J. G. De Luca, P. De Wulf, M. Salek J. Rappsilber, C. A. Moores, E. D. Salmon, A. Musacchio
Implications For Kinetochore-Microtubule Attachment From Th Structure Of An Engineered Ndc80 Complex
Cell(Cambridge, Mass. ) V. 133 427 2008
PubMed-ID: 18455984  |  Reference-DOI: 10.1016/J.CELL.2008.03.020

(-) Compounds

Molecule 1 - KINETOCHORE PROTEIN HEC1, KINETOCHORE PROTEIN SPC25
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PGEX6P-2RBS
    Fragment: CHIMERA OF NDC80 RESIDUES 80-286 WITH SPC25 RESIDUES 118- 224
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PEPTIDE LINK BETWEEN RESI 286 AND RESI 1118
    Synonym: NDC80-SPC25 CHIMERA, HSHEC1, KINETOCHORE-ASSOCIATED PROTEIN 2, HIGHLY EXPRESSED IN CANCER PROTEIN, RETINOBLASTOMA-ASSOCIATED PROTEIN HEC, HSPC25
 
Molecule 2 - KINETOCHORE PROTEIN NUF2, KINETOCHORE PROTEIN SPC24
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PGEX6P-2RBS
    Fragment: CHIMERA OF NUF2 RESIDUES 1-169 WITH SPC24 RESIDUES 122-197
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PEPTIDE LINK BETWEEN RESI 169 AND RESI 1122
    Synonym: NUF2-SPC24 CHIMERA, HNUF2, HNUF2R, HSNUF2, CELL DIVISION CYCLE-ASSOCIATED PROTEIN 1, HSPC24

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2IPH2Ligand/IonPHENOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2IPH1Ligand/IonPHENOL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2IPH1Ligand/IonPHENOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:228 , CYS C:134 , THR C:137 , ARG D:19BINDING SITE FOR RESIDUE IPH C2194
2AC2SOFTWARETYR B:228 , PHE B:243 , ARG C:19 , ALA D:133 , CYS D:134 , THR D:137BINDING SITE FOR RESIDUE IPH D2198
3AC3SOFTWARELYS A:199 , GLU A:200 , PRO B:120 , THR B:171 , VAL B:172 , GLY B:173BINDING SITE FOR RESIDUE GOL B2225
4AC4SOFTWAREPRO A:120 , SER A:121 , VAL A:172 , GLY A:173 , PHE B:135BINDING SITE FOR RESIDUE GOL A2222

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VE7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:80 -Lys A:81
2Ala A:240 -Asp A:241
3Tyr C:37 -Pro C:38
4Tyr D:37 -Pro D:38

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VE7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VE7)

(-) Exons   (12, 21)

Asymmetric Unit (12, 21)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002615971ENSE00001147512chr18:2571510-2571682173NDC80_HUMAN-00--
1.2ENST000002615972ENSE00000799508chr18:2572976-2573085110NDC80_HUMAN1-34340--
1.3ENST000002615973ENSE00000521757chr18:2574988-257506578NDC80_HUMAN34-60270--
1.4ENST000002615974ENSE00000664880chr18:2577745-2577868124NDC80_HUMAN60-101422A:79-101
B:79-101		23
23
1.5ENST000002615975ENSE00000664881chr18:2577968-2578140173NDC80_HUMAN102-159582A:102-159
B:102-159		58
58
1.6ENST000002615976ENSE00000664882chr18:2578926-2579028103NDC80_HUMAN159-193352A:159-193
B:159-193		35
35
1.7ENST000002615977ENSE00000521765chr18:2585112-258520190NDC80_HUMAN194-223302A:194-223 (gaps)
B:194-223 (gaps)		30
30
1.8ENST000002615978ENSE00000664888chr18:2587829-258792294NDC80_HUMAN224-255322A:224-255
B:224-255		32
32
1.9ENST000002615979ENSE00000664889chr18:2589203-2589309107NDC80_HUMAN255-290362A:255-1120 (gaps)
B:255-1120 (gaps)		36
36
1.10ENST0000026159710ENSE00000664890chr18:2590017-2590161145NDC80_HUMAN291-339492A:1121-1145 (gaps)
B:1121-1122		49
2
1.11ENST0000026159711ENSE00000664891chr18:2595415-2595620206NDC80_HUMAN339-407692A:1145-1217 (gaps)
B:1123-1160 (gaps)		69
42
1.12ENST0000026159712ENSE00001147432chr18:2599018-2599170153NDC80_HUMAN408-458512A:1218-1221
B:1161-1177 (gaps)		4
35
1.13ENST0000026159713ENSE00001016867chr18:2601395-260148490NDC80_HUMAN459-488301-
B:1178-1179		-
2
1.14ENST0000026159714ENSE00001016868chr18:2606414-260650693NDC80_HUMAN489-519311-
B:1180-1208 (gaps)		-
29
1.15ENST0000026159715ENSE00001016869chr18:2608699-2608829131NDC80_HUMAN520-563441-
B:1209-1224		-
16
1.16ENST0000026159716ENSE00001276649chr18:2610758-2610860103NDC80_HUMAN563-597350--
1.17ENST0000026159717ENSE00001276765chr18:2616436-2616634199NDC80_HUMAN598-642450--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with NDC80_HUMAN | O14777 from UniProtKB/Swiss-Prot  Length:642

    Alignment length:333
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408   
         NDC80_HUMAN     79 KIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQ  411
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhhhh-hhh-hhhhhhhhhhhhh----------------------hhhh----------hhhh----------------------------------------hhhhhh---hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: A:79-101Exon 1.5  PDB: A:102-159 UniProt: 102-159                 ----------------------------------Exon 1.7  PDB: A:194-223 (gapsExon 1.8  PDB: A:224-255        -----------------------------------Exon 1.10  PDB: A:1121-1145 (gaps)               --------------------------------------------------------------------1.12 Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------Exon 1.6  PDB: A:159-193           -------------------------------------------------------------Exon 1.9  PDB: A:255-1120 (gaps)    ------------------------------------------------Exon 1.11  PDB: A:1145-1217 (gaps) UniProt: 339-407                  ---- Transcript 1 (2)
                2ve7 A   79 MIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESS---------GEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQER-STANKANAER-LKR-LQKSADLYKDRLG----------------------LEIR----------FTNI----------------------------------------NPESPF---RKAFTAT 1221
                                    88        98       108       118       128       138       148       158       168       178       188       198   |     -   |   218       228       238       248       258       268       278      1118        |-| | | 1136      |  -         -      1144  |      -   |  |  -         -         -         -      1167  |   1218   
                                                                                                                                                     202       212                                                                       286 |     1127 | | |        1143                   1144  |       1158  |                                     1165 1170   |      
                                                                                                                                                                                                                                          1118       1128 | |                                  1147          1161                                              1215      
                                                                                                                                                                                                                                                       1130 |                                                                                                            
                                                                                                                                                                                                                                                         1131                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:303
 aligned with NDC80_HUMAN | O14777 from UniProtKB/Swiss-Prot  Length:642

    Alignment length:470
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548
         NDC80_HUMAN     79 KIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQ  548
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Ndc80_HEC-2ve7B01 B:80-215                                                                                                              ----------------------------------------------------------------------- -----                                                                       --------    ------------------------------  --                -------  --------                                            ----------- ----------------                  ---------------- Pfam domains (1)
           Pfam domains (2) -Ndc80_HEC-2ve7B02 B:80-215                                                                                                              ----------------------------------------------------------------------- -----                                                                       --------    ------------------------------  --                -------  --------                                            ----------- ----------------                  ---------------- Pfam domains (2)
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhhhh-----------------------------------------------------------------------hhhhhhhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hh----------------hhhhhhh--hhhhhhhh--------------------------------------------hhhhhhhhhhh-hhhhhhhhhhhhhhhh------------------hhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeee------eeeee-------------------------------eeeeee--------------------------------------------------ee-------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: B:79-101Exon 1.5  PDB: B:102-159 UniProt: 102-159                 ----------------------------------Exon 1.7  PDB: B:194-223 (gapsExon 1.8  PDB: B:224-255        -----------------------------------Exon 1.10  PDB: B:1121-1122 UniProt: 291-339     --------------------------------------------------------------------Exon 1.12  PDB: B:1161-1177 (gaps) UniProt: 408-458Exon 1.13  PDB: B:1178-1179   Exon 1.14 UniProt: 489-519     Exon 1.15  PDB: B:1209-1224   Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------Exon 1.6  PDB: B:159-193           -------------------------------------------------------------Exon 1.9  PDB: B:255-1120 (gaps)    ------------------------------------------------Exon 1.11  PDB: B:1123-1160 (gaps) UniProt: 339-407 [INCOMPLETE]     --------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                2ve7 B   79 MIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESS--------WGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQER-STANK-----------------------------------------------------------------------ANAERLKR----LQKSADLYKDRLGLEIRKIYGEKLQFIFTN--ID----------------PKNPESP--FMFSLHLN--------------------------------------------EARDYEVSDSA-GLAEFQENVRKTNNFS------------------AFLANVRKAFTATVYQ 1224
                                    88        98       108       118       128       138       148       158       168       178       188       198   |     -  |    218       228       238       248       258       268       278      1118   |     -         -         -         -         -         -         -     |1127  |   1133      1143      1153      1161|        -      1165   |  1173   |     -         -         -         -      1179        |-|     1202     |   -         -    | 1214      1224
                                                                                                                                                     202      211                                                                        286 |   |                                                                    1123   1130 1131                         1160  ||             1163  1169  |   1177                                         1178      1188 |           1208               1209               
                                                                                                                                                                                                                                          1118   |                                                                                                                1161|                      1170                                                            1193                                                 
                                                                                                                                                                                                                                              1122                                                                                                                 1162                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:219
 aligned with NUF2_HUMAN | Q9BZD4 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:388
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383        
          NUF2_HUMAN      4 LSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLDSVPVEEQEEFKQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISEKTKRLNELKLSVVSLKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKKIQDLSDNREKLASILKESLNLEDQIESDESELKKLKTEENSFKRLMIVKKEKLATAQFKINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERV  391
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhh----hh--------------hhhhhhhhhhhhhhhhh------------------------hhhhhhhhhhhhhhhhhh---------hhhhh Sec.struct. author (1)
     Sec.struct. author (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ee--------eeee--------------------------eeee--------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ve7 C    4 LSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLE----------------------------------------------------------------------------------------------------------------------IPSAVYVAQLYHQ----VS--------------KIEWEYECEPGMVKGIH------------------------QPIHLDSTQLSRKFISDY---------LWSLV 1193
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163   |     -         -         -         -         -         -         -         -         -         -         -         -  |   1140    | 1146|        -     |1152      1162 |       -         -      1174      1184   |     -   |    
                                                                                                                                                                                             167                                                                                                                   1133        1145 1146|           1148            1164                     1171             1188      1189    
                                                                                                                                                                                                                                                                                                                                     1147                                                                                       


Chain D from PDB  Type:PROTEIN  Length:242
 aligned with NUF2_HUMAN | Q9BZD4 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393  
          NUF2_HUMAN      4 LSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLDSVPVEEQEEFKQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISEKTKRLNELKLSVVSLKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKKIQDLSDNREKLASILKESLNLEDQIESDESELKKLKTEENSFKRLMIVKKEKLATAQFKINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERVTTIN  395
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Nuf2-2ve7D01 D:4-149                                                                                                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) Nuf2-2ve7D02 D:4-149                                                                                                                              ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------------------------------------------------------------hhhhhh------------------------------------------hhhhhhhhhhhhhhhhhh----hh--------------heeee.......eeeeee..--------------..ee.----.ee.....hhhhhhhh---------hhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ve7 D    4 LSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERL---------------------------------------------------------------EKEVDE------------------------------------------DTTVTIPSAVYVAQLYHQ----VS--------------KIEWEYECEPGMVKGIHHGP--------------SVAQP----IHLDSTQLSRKFISDY---------LWSLVDTEW 1197
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     |   -         -         -         -         -         -      1122    |    -         -         -         -      1130      1140    | 1146|        -     |1152      1162    |    -      1168   |  1174      1184   |     -   |  1195  
                                                                                                                                                                                               169                                                            1122 1127                                       1128             1145 1146|           1148               1167           1168   | 1173           1188      1189        
                                                                                                                                                                                                                                                                                                                                     1147                                                 1172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VE7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VE7)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ndc80_HEC] (1)
(-)
Clan: no clan defined [family: Nuf2] (1)

(-) Gene Ontology  (23, 60)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (NDC80_HUMAN | O14777)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
biological process
    GO:0051315    attachment of mitotic spindle microtubules to kinetochore    The cell cycle process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex as part of mitotic metaphase plate congression.
    GO:0008608    attachment of spindle microtubules to kinetochore    The process in which spindle microtubules become physically associated with the proteins making up the kinetochore complex.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
    GO:0000132    establishment of mitotic spindle orientation    A cell cycle process that sets the alignment of mitotic spindle relative to other cellular structures.
    GO:0000070    mitotic sister chromatid segregation    The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
    GO:0007052    mitotic spindle organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
    GO:0007062    sister chromatid cohesion    The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
cellular component
    GO:0031262    Ndc80 complex    A protein complex conserved among eukaryotes that forms part of the kinetochore and plays an essential role in forming stable kinetochore-microtubule attachments. The complex contains proteins known in several species, including budding and fission yeasts, as Ndc80p, Nuf2p, Spc24p, and Spc25p. In vertebrates it is part of the outer plate of the kinetochore.
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0000775    chromosome, centromeric region    The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
    GO:0000777    condensed chromosome kinetochore    A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules.
    GO:0000942    condensed nuclear chromosome outer kinetochore    The region of a condensed nuclear chromosome kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0000776    kinetochore    A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D   (NUF2_HUMAN | Q9BZD4)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
    GO:0007062    sister chromatid cohesion    The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
cellular component
    GO:0031262    Ndc80 complex    A protein complex conserved among eukaryotes that forms part of the kinetochore and plays an essential role in forming stable kinetochore-microtubule attachments. The complex contains proteins known in several species, including budding and fission yeasts, as Ndc80p, Nuf2p, Spc24p, and Spc25p. In vertebrates it is part of the outer plate of the kinetochore.
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0000775    chromosome, centromeric region    The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
    GO:0000777    condensed chromosome kinetochore    A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0000776    kinetochore    A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NDC80_HUMAN | O14777: 2igp 3iz0
        NUF2_HUMAN | Q9BZD4: 3iz0
        SPC24_HUMAN | Q8NBT2: 3iz0
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2VE7)