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2VE7
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BONSAI VERSION OF THE HUMAN NDC80 COMPLEX
Authors
:
C. Ciferri, S. Pasqualato, G. Dos Reis, E. Screpanti, A. Maiolica, J. P J. G. De Luca, P. De Wulf, M. Salek, J. Rappsilber, C. A. Moores, E. D. S A. Musacchio
Date
:
17 Oct 07 (Deposition) - 13 May 08 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.88
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Mitosis, Centromere, Cell Cycle, Microtubule, Kinetochore, Cell Division, Calponin Homology
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Ciferri, S. Pasqualato, E. Screpanti, G. Varetti, S. Santaguida, G. Dos Reis, A. Maiolica, J. Polka, J. G. De Luca, P. De Wulf, M. Salek J. Rappsilber, C. A. Moores, E. D. Salmon, A. Musacchio
Implications For Kinetochore-Microtubule Attachment From Th Structure Of An Engineered Ndc80 Complex
Cell(Cambridge, Mass. ) V. 133 427 2008
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: PHENOL (IPHa)
2b: PHENOL (IPHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
IPH
2
Ligand/Ion
PHENOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:228 , CYS C:134 , THR C:137 , ARG D:19
BINDING SITE FOR RESIDUE IPH C2194
2
AC2
SOFTWARE
TYR B:228 , PHE B:243 , ARG C:19 , ALA D:133 , CYS D:134 , THR D:137
BINDING SITE FOR RESIDUE IPH D2198
3
AC3
SOFTWARE
LYS A:199 , GLU A:200 , PRO B:120 , THR B:171 , VAL B:172 , GLY B:173
BINDING SITE FOR RESIDUE GOL B2225
4
AC4
SOFTWARE
PRO A:120 , SER A:121 , VAL A:172 , GLY A:173 , PHE B:135
BINDING SITE FOR RESIDUE GOL A2222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(12, 21)
Info
All Exons
Exon 1.4 (A:79-101 | B:79-101)
Exon 1.5 (A:102-159 | B:102-159)
Exon 1.6 (A:159-193 | B:159-193)
Exon 1.7 (A:194-223 (gaps) | B:194-223 (gaps...)
Exon 1.8 (A:224-255 | B:224-255)
Exon 1.9 (A:255-1120 (gaps) | B:255-1120 (ga...)
Exon 1.10 (A:1121-1145 (gaps) | B:1121-1122)
Exon 1.11 (A:1145-1217 (gaps) | B:1123-1160 (...)
Exon 1.12 (A:1218-1221 | B:1161-1177 (gaps))
Exon 1.13 (- | B:1178-1179)
Exon 1.14 (- | B:1180-1208 (gaps))
Exon 1.15 (- | B:1209-1224)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261597
1
ENSE00001147512
chr18:
2571510-2571682
173
NDC80_HUMAN
-
0
0
-
-
1.2
ENST00000261597
2
ENSE00000799508
chr18:
2572976-2573085
110
NDC80_HUMAN
1-34
34
0
-
-
1.3
ENST00000261597
3
ENSE00000521757
chr18:
2574988-2575065
78
NDC80_HUMAN
34-60
27
0
-
-
1.4
ENST00000261597
4
ENSE00000664880
chr18:
2577745-2577868
124
NDC80_HUMAN
60-101
42
2
A:79-101
B:79-101
23
23
1.5
ENST00000261597
5
ENSE00000664881
chr18:
2577968-2578140
173
NDC80_HUMAN
102-159
58
2
A:102-159
B:102-159
58
58
1.6
ENST00000261597
6
ENSE00000664882
chr18:
2578926-2579028
103
NDC80_HUMAN
159-193
35
2
A:159-193
B:159-193
35
35
1.7
ENST00000261597
7
ENSE00000521765
chr18:
2585112-2585201
90
NDC80_HUMAN
194-223
30
2
A:194-223 (gaps)
B:194-223 (gaps)
30
30
1.8
ENST00000261597
8
ENSE00000664888
chr18:
2587829-2587922
94
NDC80_HUMAN
224-255
32
2
A:224-255
B:224-255
32
32
1.9
ENST00000261597
9
ENSE00000664889
chr18:
2589203-2589309
107
NDC80_HUMAN
255-290
36
2
A:255-1120 (gaps)
B:255-1120 (gaps)
36
36
1.10
ENST00000261597
10
ENSE00000664890
chr18:
2590017-2590161
145
NDC80_HUMAN
291-339
49
2
A:1121-1145 (gaps)
B:1121-1122
49
2
1.11
ENST00000261597
11
ENSE00000664891
chr18:
2595415-2595620
206
NDC80_HUMAN
339-407
69
2
A:1145-1217 (gaps)
B:1123-1160 (gaps)
69
42
1.12
ENST00000261597
12
ENSE00001147432
chr18:
2599018-2599170
153
NDC80_HUMAN
408-458
51
2
A:1218-1221
B:1161-1177 (gaps)
4
35
1.13
ENST00000261597
13
ENSE00001016867
chr18:
2601395-2601484
90
NDC80_HUMAN
459-488
30
1
-
B:1178-1179
-
2
1.14
ENST00000261597
14
ENSE00001016868
chr18:
2606414-2606506
93
NDC80_HUMAN
489-519
31
1
-
B:1180-1208 (gaps)
-
29
1.15
ENST00000261597
15
ENSE00001016869
chr18:
2608699-2608829
131
NDC80_HUMAN
520-563
44
1
-
B:1209-1224
-
16
1.16
ENST00000261597
16
ENSE00001276649
chr18:
2610758-2610860
103
NDC80_HUMAN
563-597
35
0
-
-
1.17
ENST00000261597
17
ENSE00001276765
chr18:
2616436-2616634
199
NDC80_HUMAN
598-642
45
0
-
-
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ndc80_HEC_2ve7B01 (B:80-215)
1b: PFAM_Ndc80_HEC_2ve7B02 (B:80-215)
2a: PFAM_Nuf2_2ve7D01 (D:4-149)
2b: PFAM_Nuf2_2ve7D02 (D:4-149)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Ndc80_HEC]
(1)
Family
:
Ndc80_HEC
(1)
Homo sapiens (Human)
(1)
1a
Ndc80_HEC-2ve7B01
B:80-215
1b
Ndc80_HEC-2ve7B02
B:80-215
Clan
:
no clan defined [family: Nuf2]
(1)
Family
:
Nuf2
(1)
Homo sapiens (Human)
(1)
2a
Nuf2-2ve7D01
D:4-149
2b
Nuf2-2ve7D02
D:4-149
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