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(-) Description

Title :  CATALYTIC SUBUNIT OF M. JANNASCHII ASPARTATE TRANSCARBAMOYLASE
 
Authors :  J. Vitali, M. J. Colaneri, E. R. Kantrowitz
Date :  05 Oct 07  (Deposition) - 14 Oct 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  A,B,C  (1x)
Biol. Unit 3:  D,E,F  (1x)
Keywords :  Aspartate Transcarbamoylase, Pyrimidine Biosynthesis, Thermostability, Methanococcus Jannaschii, Crystal Structure, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vitali, M. J. Colaneri, E. Kantrowitz
Crystal Structure Of The Catalytic Trimer Of Methanococcus Jannaschii Aspartate Transcarbamoylase.
Proteins V. 71 1324 2008
PubMed-ID: 18058907  |  Reference-DOI: 10.1002/PROT.21667
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ASPARTATE CARBAMOYLTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEK406
    Expression System Strain: EK1594
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC SUBUNIT
    Gene: PYRB
    Organism Scientific: METHANOCOCCUS JANNASCHII
    Synonym: ASPARTATE TRANSCARBAMYLASE, ATCASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (1x): ABC   
Biological Unit 3 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:63 , HOH A:402 , HOH A:403 , HOH A:404 , LYS B:63 , HOH B:405 , LYS C:63 , HOH C:408BINDING SITE FOR RESIDUE SO4 A 351
2AC2SOFTWARELYS D:63 , HOH D:479 , HOH D:481 , HOH D:482 , LYS E:63 , HOH E:482 , LYS F:63 , HOH F:485BINDING SITE FOR RESIDUE SO4 D 352

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RGW)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:263 -Pro A:264
2Leu B:263 -Pro B:264
3Leu C:263 -Pro C:264
4Leu D:263 -Pro D:264
5Leu E:263 -Pro E:264
6Leu F:263 -Pro F:264

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RGW)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.PYRB_METJA47-54
 
 
 
 
 		  6A:47-54
B:47-54
C:47-54
D:47-54
E:47-54
F:47-54
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.PYRB_METJA47-54
 
 
 
 
 		  6A:47-54
B:47-54
C:47-54
D:47-54
E:47-54
F:47-54
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.PYRB_METJA47-54
 
 
 
 
 		  3A:47-54
B:47-54
C:47-54
-
-
-
Biological Unit 3 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.PYRB_METJA47-54
 
 
 
 
 		  3-
-
-
D:47-54
E:47-54
F:47-54

(-) Exons   (0, 0)

(no "Exon" information available for 2RGW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwa1 A:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwa2 A:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwA01 A:1-130,A:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwA02 A:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwA01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.hhhhh.hhhhhhhhhhh...eeee.hhhhh.....eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw A   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwb1 B:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwb2 B:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwB01 B:1-130,B:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwB02 B:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwB01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.hhhhh.hhhhhhhhhhh...eeee...........eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw B   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwc1 C:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwc2 C:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwC01 C:1-130,C:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwC02 C:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwC01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.......hhhhhhhhhhh...eeee...........eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw C   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwd1 D:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwd2 D:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwD01 D:1-130,D:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwD02 D:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwD01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.......hhhhhhhhhhh...eeee.hhhhh.....eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw D   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130                                                                                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwe1 E:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwe2 E:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwE01 E:1-130,E:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwE02 E:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwE01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.......hhhhhhhhhhh...eeee.hhhhh.....eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw E   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130                                                                                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:299
 aligned with PYRB_METJA | Q58976 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
           PYRB_METJA     1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
               SCOP domains d2rgwf1 F:1-148 Aspartate carbamoyltransferase catalytic subunit                                                                                    d2rgwf2 F:149-303 Aspartate carbamoyltransferase catalytic subunit                                                                                          SCOP domains
               CATH domains 2rgwF01 F:1-130,F:288-303  [code=3.40.50.1370, no name defined]                                                                   2rgwF02 F:131-287  [code=3.40.50.1370, no name defined]                                                                                                      2rgwF01          CATH domains
           Pfam domains (1) -OTCace_N-2rgwF07 F:2-145                                                                                                                        ----OTCace-2rgwF01 F:150-299                                                                                                                              ---- Pfam domains (1)
           Pfam domains (2) -OTCace_N-2rgwF08 F:2-145                                                                                                                        ----OTCace-2rgwF02 F:150-299                                                                                                                              ---- Pfam domains (2)
           Pfam domains (3) -OTCace_N-2rgwF09 F:2-145                                                                                                                        ----OTCace-2rgwF03 F:150-299                                                                                                                              ---- Pfam domains (3)
           Pfam domains (4) -OTCace_N-2rgwF10 F:2-145                                                                                                                        ----OTCace-2rgwF04 F:150-299                                                                                                                              ---- Pfam domains (4)
           Pfam domains (5) -OTCace_N-2rgwF11 F:2-145                                                                                                                        ----OTCace-2rgwF05 F:150-299                                                                                                                              ---- Pfam domains (5)
           Pfam domains (6) -OTCace_N-2rgwF12 F:2-145                                                                                                                        ----OTCace-2rgwF06 F:150-299                                                                                                                              ---- Pfam domains (6)
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhh.eeeee....hhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh.....eeeee.hhhhh.hhhhhhhhhhh...eeee.hhhhh.....eeee...hhhhh.hhhhhhhhhhhhh.hhhhhh....eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rgw F   1 MKHLISMKDIGKEEILEILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPIINAG----QHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLPRVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDN 303
                                    10        20        30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   
                                                                                                                                                      125  130
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)
(-)
Methanococcus jannaschii. (1)
1a2rgwA02A:131-287
1b2rgwB02B:131-287
1c2rgwE01E:1-130,E:288-303
1d2rgwF01F:1-130,F:288-303
1e2rgwC02C:131-287
1f2rgwD02D:131-287
1g2rgwE02E:131-287
1h2rgwF02F:131-287
1i2rgwA01A:1-130,A:288-303
1j2rgwB01B:1-130,B:288-303
1k2rgwC01C:1-130,C:288-303
1l2rgwD01D:1-130,D:288-303

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: OTCace] (48)
(-)
Clan: no clan defined [family: OTCace_N] (48)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PYRB_METJA | Q58976)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0004070    aspartate carbamoyltransferase activity    Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0044205    'de novo' UMP biosynthetic process    The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0009220    pyrimidine ribonucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0000050    urea cycle    The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2rgw
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  PYRB_METJA | Q58976
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  2.1.3.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYRB_METJA | Q58976: 3e2p 4ekn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2RGW)