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2RGW
Biol. Unit 1
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Asym.Unit (279 KB)
Biol.Unit 1 (274 KB)
Biol.Unit 2 (139 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
CATALYTIC SUBUNIT OF M. JANNASCHII ASPARTATE TRANSCARBAMOYLASE
Authors
:
J. Vitali, M. J. Colaneri, E. R. Kantrowitz
Date
:
05 Oct 07 (Deposition) - 14 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: D,E,F (1x)
Keywords
:
Aspartate Transcarbamoylase, Pyrimidine Biosynthesis, Thermostability, Methanococcus Jannaschii, Crystal Structure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Vitali, M. J. Colaneri, E. Kantrowitz
Crystal Structure Of The Catalytic Trimer Of Methanococcus Jannaschii Aspartate Transcarbamoylase.
Proteins V. 71 1324 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:63 , HOH A:402 , HOH A:403 , HOH A:404 , LYS B:63 , HOH B:405 , LYS C:63 , HOH C:408
BINDING SITE FOR RESIDUE SO4 A 351
2
AC2
SOFTWARE
LYS D:63 , HOH D:479 , HOH D:481 , HOH D:482 , LYS E:63 , HOH E:482 , LYS F:63 , HOH F:485
BINDING SITE FOR RESIDUE SO4 D 352
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:47-54,B:47-54,C:47-54,D:47-54,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_METJA
47-54
6
A:47-54
B:47-54
C:47-54
D:47-54
E:47-54
F:47-54
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2rgwa1 (A:1-148)
1b: SCOP_d2rgwa2 (A:149-303)
1c: SCOP_d2rgwf1 (F:1-148)
1d: SCOP_d2rgwf2 (F:149-303)
1e: SCOP_d2rgwb1 (B:1-148)
1f: SCOP_d2rgwb2 (B:149-303)
1g: SCOP_d2rgwc1 (C:1-148)
1h: SCOP_d2rgwc2 (C:149-303)
1i: SCOP_d2rgwd1 (D:1-148)
1j: SCOP_d2rgwd2 (D:149-303)
1k: SCOP_d2rgwe1 (E:1-148)
1l: SCOP_d2rgwe2 (E:149-303)
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Methanococcus jannaschii [TaxId: 2190]
(1)
1a
d2rgwa1
A:1-148
1b
d2rgwa2
A:149-303
1c
d2rgwf1
F:1-148
1d
d2rgwf2
F:149-303
1e
d2rgwb1
B:1-148
1f
d2rgwb2
B:149-303
1g
d2rgwc1
C:1-148
1h
d2rgwc2
C:149-303
1i
d2rgwd1
D:1-148
1j
d2rgwd2
D:149-303
1k
d2rgwe1
E:1-148
1l
d2rgwe2
E:149-303
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2rgwA02 (A:131-287)
1b: CATH_2rgwB02 (B:131-287)
1c: CATH_2rgwE01 (E:1-130,E:288-303)
1d: CATH_2rgwF01 (F:1-130,F:288-303)
1e: CATH_2rgwC02 (C:131-287)
1f: CATH_2rgwD02 (D:131-287)
1g: CATH_2rgwE02 (E:131-287)
1h: CATH_2rgwF02 (F:131-287)
1i: CATH_2rgwA01 (A:1-130,A:288-303)
1j: CATH_2rgwB01 (B:1-130,B:288-303)
1k: CATH_2rgwC01 (C:1-130,C:288-303)
1l: CATH_2rgwD01 (D:1-130,D:288-303)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Methanococcus jannaschii.
(1)
1a
2rgwA02
A:131-287
1b
2rgwB02
B:131-287
1c
2rgwE01
E:1-130,E:288-303
1d
2rgwF01
F:1-130,F:288-303
1e
2rgwC02
C:131-287
1f
2rgwD02
D:131-287
1g
2rgwE02
E:131-287
1h
2rgwF02
F:131-287
1i
2rgwA01
A:1-130,A:288-303
1j
2rgwB01
B:1-130,B:288-303
1k
2rgwC01
C:1-130,C:288-303
1l
2rgwD01
D:1-130,D:288-303
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_OTCace_2rgwF01 (F:150-299)
1b: PFAM_OTCace_2rgwF02 (F:150-299)
1c: PFAM_OTCace_2rgwF03 (F:150-299)
1d: PFAM_OTCace_2rgwF04 (F:150-299)
1e: PFAM_OTCace_2rgwF05 (F:150-299)
1f: PFAM_OTCace_2rgwF06 (F:150-299)
2a: PFAM_OTCace_N_2rgwF07 (F:2-145)
2b: PFAM_OTCace_N_2rgwF08 (F:2-145)
2c: PFAM_OTCace_N_2rgwF09 (F:2-145)
2d: PFAM_OTCace_N_2rgwF10 (F:2-145)
2e: PFAM_OTCace_N_2rgwF11 (F:2-145)
2f: PFAM_OTCace_N_2rgwF12 (F:2-145)
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(
)
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)
Clan
:
no clan defined [family: OTCace]
(48)
Family
:
OTCace
(48)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
OTCace-2rgwF01
F:150-299
1b
OTCace-2rgwF02
F:150-299
1c
OTCace-2rgwF03
F:150-299
1d
OTCace-2rgwF04
F:150-299
1e
OTCace-2rgwF05
F:150-299
1f
OTCace-2rgwF06
F:150-299
Clan
:
no clan defined [family: OTCace_N]
(48)
Family
:
OTCace_N
(48)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
2a
OTCace_N-2rgwF07
F:2-145
2b
OTCace_N-2rgwF08
F:2-145
2c
OTCace_N-2rgwF09
F:2-145
2d
OTCace_N-2rgwF10
F:2-145
2e
OTCace_N-2rgwF11
F:2-145
2f
OTCace_N-2rgwF12
F:2-145
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Asym.Unit (279 KB)
Header - Asym.Unit
Biol.Unit 1 (274 KB)
Header - Biol.Unit 1
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