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(-) Description

Title :  STRUCTURE OF DNMT3A-DNMT3L C-TERMINAL DOMAIN COMPLEX
 
Authors :  D. Jia, X. Cheng
Date :  29 Jul 07  (Deposition) - 04 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.89
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Dna Methyltransferase 3A (Dnmt3A) And Its Regulatory Factor, Dna Methyltransferase 3-Like Protein (Dnmt3L), Nucleus, S- Adenosyl-L-Methionine, Transferase/Transferase Regulator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Jia, R. Z. Jurkowska, X. Zhang, A. Jeltsch, X. Cheng
Structure Of Dnmt3A Bound To Dnmt3L Suggests A Model For De Novo Dna Methylation.
Nature V. 449 248 2007
PubMed-ID: 17713477  |  Reference-DOI: 10.1038/NATURE06146
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A
    Chains: A, D, E, H
    EC Number: 2.1.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PXC528
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 623 TO 908
    Gene: DNMT3A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNMT3A, DNA METHYLTRANSFERASE HSAIIIA, DNA MTASE HSAIIIA, M.HSAIIIA
 
Molecule 2 - DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE
    Chains: B, C, F, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PXC510
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 160 TO 386
    Gene: DNMT3L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SAH4Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:636 , ASP A:637 , GLY A:638 , ILE A:639 , THR A:641 , SER A:659 , GLU A:660 , VAL A:661 , CYS A:662 , ASP A:682 , VAL A:683 , ARG A:684 , GLY A:703 , PRO A:705 , LEU A:726 , ARG A:887 , SER A:888 , TRP A:889BINDING SITE FOR RESIDUE SAH A 1
2AC2SOFTWAREPHE D:636 , ASP D:637 , GLY D:638 , ILE D:639 , THR D:641 , SER D:659 , GLU D:660 , VAL D:661 , CYS D:662 , ASP D:682 , VAL D:683 , ARG D:684 , GLY D:703 , PRO D:705 , LEU D:726 , ARG D:887 , SER D:888 , TRP D:889BINDING SITE FOR RESIDUE SAH D 4
3AC3SOFTWAREPHE E:636 , GLY E:638 , ILE E:639 , THR E:641 , SER E:659 , GLU E:660 , VAL E:661 , CYS E:662 , ASP E:682 , VAL E:683 , ARG E:684 , GLY E:703 , PRO E:705 , LEU E:726 , ARG E:887 , SER E:888 , TRP E:889BINDING SITE FOR RESIDUE SAH E 5
4AC4SOFTWAREPHE H:636 , GLY H:638 , ILE H:639 , THR H:641 , GLU H:660 , VAL H:661 , CYS H:662 , ASP H:682 , VAL H:683 , GLY H:703 , ARG H:887 , SER H:888 , TRP H:889BINDING SITE FOR RESIDUE SAH H 8

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QRV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QRV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (12, 48)

Asymmetric Unit (12, 48)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_051962R278GDNM3L_HUMANPolymorphism7354779B/C/F/GR278G
02UniProtVAR_071467L648PDNM3A_HUMANDisease (TBRS)587777507A/D/E/HL644P
03UniProtVAR_067234G699DDNM3A_HUMANUnclassified761064473A/D/E/HG695D
04UniProtVAR_071468P700LDNM3A_HUMANDisease (TBRS)772368909A/D/E/HP696L
05UniProtVAR_071469R749CDNM3A_HUMANDisease (TBRS)754613602A/D/E/HR745C
06UniProtVAR_077524R771QDNM3A_HUMANUnclassified (TBRS)757823678A/D/E/HR767Q
07UniProtVAR_077525V778GDNM3A_HUMANUnclassified (TBRS)  ---A/D/E/HV774G
08UniProtVAR_067236R882CDNM3A_HUMANUnclassified377577594A/D/E/HR878C
09UniProtVAR_067237R882HDNM3A_HUMANUnclassified147001633A/D/E/HR878H
10UniProtVAR_067238R882PDNM3A_HUMANUnclassified147001633A/D/E/HR878P
11UniProtVAR_071471F902SDNM3A_HUMANDisease (TBRS)587777510A/D/E/HF898S
12UniProtVAR_071472P904LDNM3A_HUMANDisease (TBRS)149095705A/D/E/HP900L
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (12, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_051962R278GDNM3L_HUMANPolymorphism7354779B/CR278G
02UniProtVAR_071467L648PDNM3A_HUMANDisease (TBRS)587777507A/DL644P
03UniProtVAR_067234G699DDNM3A_HUMANUnclassified761064473A/DG695D
04UniProtVAR_071468P700LDNM3A_HUMANDisease (TBRS)772368909A/DP696L
05UniProtVAR_071469R749CDNM3A_HUMANDisease (TBRS)754613602A/DR745C
06UniProtVAR_077524R771QDNM3A_HUMANUnclassified (TBRS)757823678A/DR767Q
07UniProtVAR_077525V778GDNM3A_HUMANUnclassified (TBRS)  ---A/DV774G
08UniProtVAR_067236R882CDNM3A_HUMANUnclassified377577594A/DR878C
09UniProtVAR_067237R882HDNM3A_HUMANUnclassified147001633A/DR878H
10UniProtVAR_067238R882PDNM3A_HUMANUnclassified147001633A/DR878P
11UniProtVAR_071471F902SDNM3A_HUMANDisease (TBRS)587777510A/DF898S
12UniProtVAR_071472P904LDNM3A_HUMANDisease (TBRS)149095705A/DP900L
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (12, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_051962R278GDNM3L_HUMANPolymorphism7354779F/GR278G
02UniProtVAR_071467L648PDNM3A_HUMANDisease (TBRS)587777507E/HL644P
03UniProtVAR_067234G699DDNM3A_HUMANUnclassified761064473E/HG695D
04UniProtVAR_071468P700LDNM3A_HUMANDisease (TBRS)772368909E/HP696L
05UniProtVAR_071469R749CDNM3A_HUMANDisease (TBRS)754613602E/HR745C
06UniProtVAR_077524R771QDNM3A_HUMANUnclassified (TBRS)757823678E/HR767Q
07UniProtVAR_077525V778GDNM3A_HUMANUnclassified (TBRS)  ---E/HV774G
08UniProtVAR_067236R882CDNM3A_HUMANUnclassified377577594E/HR878C
09UniProtVAR_067237R882HDNM3A_HUMANUnclassified147001633E/HR878H
10UniProtVAR_067238R882PDNM3A_HUMANUnclassified147001633E/HR878P
11UniProtVAR_071471F902SDNM3A_HUMANDisease (TBRS)587777510E/HF898S
12UniProtVAR_071472P904LDNM3A_HUMANDisease (TBRS)149095705E/HP900L
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_MT_C5PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.DNM3A_HUMAN634-912
 
 
 		  4A:630-908
D:630-908
E:630-908
H:630-908
2C5_MTASE_1PS00094 C-5 cytosine-specific DNA methylases active site.DNM3A_HUMAN702-714
 
 
 		  4A:698-710
D:698-710
E:698-710
H:698-710
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_MT_C5PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.DNM3A_HUMAN634-912
 
 
 		  2A:630-908
D:630-908
-
-
2C5_MTASE_1PS00094 C-5 cytosine-specific DNA methylases active site.DNM3A_HUMAN702-714
 
 
 		  2A:698-710
D:698-710
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_MT_C5PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.DNM3A_HUMAN634-912
 
 
 		  2-
-
E:630-908
H:630-908
2C5_MTASE_1PS00094 C-5 cytosine-specific DNA methylases active site.DNM3A_HUMAN702-714
 
 
 		  2-
-
E:698-710
H:698-710

(-) Exons   (8, 32)

Asymmetric Unit (8, 32)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003211172ENSE00001522911chr2:25564754-2556469560DNM3A_HUMAN-00--
1.3ENST000003211173ENSE00001408175chr2:25537030-25536782249DNM3A_HUMAN1-24240--
1.4ENST000003211174ENSE00000808934chr2:25523112-25523008105DNM3A_HUMAN25-59350--
1.5aENST000003211175aENSE00001326003chr2:25505580-25505310271DNM3A_HUMAN60-150910--
1.6ENST000003211176ENSE00001486208chr2:25498412-2549836944DNM3A_HUMAN150-164150--
1.7ENST000003211177ENSE00000808931chr2:25497956-25497810147DNM3A_HUMAN165-213490--
1.11ENST0000032111711ENSE00001739049chr2:25471121-25470906216DNM3A_HUMAN214-285720--
1.12bENST0000032111712bENSE00001281470chr2:25470618-25470460159DNM3A_HUMAN286-338530--
1.13bENST0000032111713bENSE00001071033chr2:25470027-25469920108DNM3A_HUMAN339-374360--
1.14cENST0000032111714cENSE00001281455chr2:25469645-25469489157DNM3A_HUMAN375-427530--
1.15aENST0000032111715aENSE00001071035chr2:25469178-25469029150DNM3A_HUMAN427-477510--
1.16ENST0000032111716ENSE00001281442chr2:25468933-2546888945DNM3A_HUMAN477-492160--
1.17bENST0000032111717bENSE00001071029chr2:25468201-2546812280DNM3A_HUMAN492-518270--
1.18ENST0000032111718ENSE00001071031chr2:25467521-25467409113DNM3A_HUMAN519-556380--
1.19bENST0000032111719bENSE00001281418chr2:25467207-25467024184DNM3A_HUMAN556-617620--
1.20aENST0000032111720aENSE00001281558chr2:25466851-2546676785DNM3A_HUMAN618-646294A:623-642
D:626-642
E:623-642
H:626-642		20
17
20
17
1.21cENST0000032111721cENSE00001071020chr2:25464576-25464431146DNM3A_HUMAN646-694494A:642-690
D:642-690
E:642-690
H:642-690		49
49
49
49
1.22ENST0000032111722ENSE00001071021chr2:25463599-2546350991DNM3A_HUMAN695-725314A:691-721
D:691-721
E:691-721
H:691-721		31
31
31
31
1.23ENST0000032111723ENSE00001726066chr2:25463319-25463171149DNM3A_HUMAN725-774504A:721-770
D:721-770
E:721-770
H:721-770		50
50
50
50
1.25bENST0000032111725bENSE00001622127chr2:25462084-2546199986DNM3A_HUMAN775-803294A:771-799
D:771-799
E:771-799
H:771-799		29
29
29
29
1.26bENST0000032111726bENSE00001679782chr2:25459874-2545980570DNM3A_HUMAN803-826244A:799-822
D:799-822
E:799-822
H:799-822		24
24
24
24
1.27bENST0000032111727bENSE00001765738chr2:25458694-25458576119DNM3A_HUMAN827-866404A:823-862 (gaps)
D:823-862 (gaps)
E:823-862 (gaps)
H:823-862 (gaps)		40
40
40
40
1.28cENST0000032111728cENSE00001761921chr2:25457289-254558451445DNM3A_HUMAN866-912474A:862-908
D:862-908
E:862-908
H:862-908		47
47
47
47

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with DNM3A_HUMAN | Q9Y6K1 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:286
                                   636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906      
          DNM3A_HUMAN   627 PAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 912
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....hhhhhhhhhh...eeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhhh....eeee...hhhhh..............hhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhh.....ee.hhh.....eeeeee.................hhhhh.....ee......--------------....eee..eee..hhhhhhhhhh...........hhhhhhhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ---------------------P--------------------------------------------------DL------------------------------------------------C---------------------Q------G-------------------------------------------------------------------------------------------------------C-------------------S-L-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------------------------------ SAPs(SNPs) (3)
                PROSITE (1) -------SAM_MT_C5  PDB: A:630-908 UniProt: 634-912                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------C5_MTASE_1   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.20a          ------------------------------------------------Exon 1.22  PDB: A:691-721      -------------------------------------------------Exon 1.25b  PDB: A:771-799   -----------------------Exon 1.27b  PDB: A:823-862 (gaps)       ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------Exon 1.21c  PDB: A:642-690 UniProt: 646-694      ------------------------------Exon 1.23  PDB: A:721-770 UniProt: 725-774        ----------------------------Exon 1.26b              ---------------------------------------Exon 1.28c  PDB: A:862-908 UniProt: 866-912     Transcript 1 (2)
                 2qrv A 623 PAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVR--------------QHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 908
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822    |    -       842       852       862       872       882       892       902      
                                                                                                                                                                                                                                      827            842                                                                  


Chain B from PDB  Type:PROTEIN  Length:186
 aligned with DNM3L_HUMAN | Q9UJW3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:202
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  
          DNM3L_HUMAN   178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKNCFLPLREYFKYFS 379
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh....eeee...............-----..eeee......hhhhhhhh....eeeee...........hhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhh...ee........----.eeee.............hhhhhhhhhhhhhh.-------hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrv B 178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLE-----GQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGS----VRVWSNIPAIRSRHWALVSEEELSLLAQNKQSS-------TKLVKNCFLPLREYFKYFS 379
                                   187       197       207  |    217       227       237       247       257       267       277       287       297       307        |-   |   327       337       347     |   -   |   367       377  
                                                          210   216                                                                                                 316  321                             353     361                  


Chain C from PDB  Type:PROTEIN  Length:186
 aligned with DNM3L_HUMAN | Q9UJW3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:202
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  
          DNM3L_HUMAN   178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKNCFLPLREYFKYFS 379
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh....eeee...............-----..eeee......hhhhhhhh....eeeee...........hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhh...ee........----.eeee.............hhhhhhhhhhhhhh.-------hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrv C 178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLE-----GQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGS----VRVWSNIPAIRSRHWALVSEEELSLLAQNKQSS-------TKLVKNCFLPLREYFKYFS 379
                                   187       197       207  |    217       227       237       247       257       267       277       287       297       307        |-   |   327       337       347     |   -   |   367       377  
                                                          210   216                                                                                                 316  321                             353     361                  


Chain D from PDB  Type:PROTEIN  Length:267
 aligned with DNM3A_HUMAN | Q9Y6K1 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:283
                                   639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909   
          DNM3A_HUMAN   630 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 912
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhh...eeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhhh....eeee...hhhhh..............hhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhh......ee.hhh.....eeeeee.................hhhhhh...eee......----------------..eee..eee..hhhhhhhhhh...........hhhhhhhhhhh..hhhhhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ------------------P--------------------------------------------------DL------------------------------------------------C---------------------Q------G-------------------------------------------------------------------------------------------------------C-------------------S-L-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------------------------------ SAPs(SNPs) (3)
                PROSITE (1) ----SAM_MT_C5  PDB: D:630-908 UniProt: 634-912                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------C5_MTASE_1   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.20a       ------------------------------------------------Exon 1.22  PDB: D:691-721      -------------------------------------------------Exon 1.25b  PDB: D:771-799   -----------------------Exon 1.27b  PDB: D:823-862 (gaps)       ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.21c  PDB: D:642-690 UniProt: 646-694      ------------------------------Exon 1.23  PDB: D:721-770 UniProt: 725-774        ----------------------------Exon 1.26b              ---------------------------------------Exon 1.28c  PDB: D:862-908 UniProt: 866-912     Transcript 1 (2)
                 2qrv D 626 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVR----------------FPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 908
                                   635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825 |       -       845       855       865       875       885       895       905   
                                                                                                                                                                                                                                   827              844                                                                


Chain E from PDB  Type:PROTEIN  Length:270
 aligned with DNM3A_HUMAN | Q9Y6K1 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:286
                                   636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906      
          DNM3A_HUMAN   627 PAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 912
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....hhhhhhhhhh...eeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhhh....eeee...hhhhh..............hhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhh.....ee.hhh.....eeeeee.................hhhhhh....ee......----------------..ee....ee..hhhhhhhhh............hhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ---------------------P--------------------------------------------------DL------------------------------------------------C---------------------Q------G-------------------------------------------------------------------------------------------------------C-------------------S-L-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------------------------------ SAPs(SNPs) (3)
                PROSITE (1) -------SAM_MT_C5  PDB: E:630-908 UniProt: 634-912                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------C5_MTASE_1   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.20a          ------------------------------------------------Exon 1.22  PDB: E:691-721      -------------------------------------------------Exon 1.25b  PDB: E:771-799   -----------------------Exon 1.27b  PDB: E:823-862 (gaps)       ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------Exon 1.21c  PDB: E:642-690 UniProt: 646-694      ------------------------------Exon 1.23  PDB: E:721-770 UniProt: 725-774        ----------------------------Exon 1.26b              ---------------------------------------Exon 1.28c  PDB: E:862-908 UniProt: 866-912     Transcript 1 (2)
                 2qrv E 623 PAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVR----------------FPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 908
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822    |    -         - |     852       862       872       882       892       902      
                                                                                                                                                                                                                                      827              844                                                                


Chain F from PDB  Type:PROTEIN  Length:186
 aligned with DNM3L_HUMAN | Q9UJW3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:202
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  
          DNM3L_HUMAN   178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKNCFLPLREYFKYFS 379
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh....eeee...............-----..eeee......hhhhhhhh....eeeee...........hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhh...ee........----.eeee.............hhhhhhhhhhhhhh.-------hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrv F 178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLE-----GQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGS----VRVWSNIPAIRSRHWALVSEEELSLLAQNKQSS-------TKLVKNCFLPLREYFKYFS 379
                                   187       197       207  |    217       227       237       247       257       267       277       287       297       307        |-   |   327       337       347     |   -   |   367       377  
                                                          210   216                                                                                                 316  321                             353     361                  


Chain G from PDB  Type:PROTEIN  Length:186
 aligned with DNM3L_HUMAN | Q9UJW3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:202
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  
          DNM3L_HUMAN   178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKNCFLPLREYFKYFS 379
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh....eeee...............-----..eeee......hhhhhhhh....eeeee...........hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhh...ee........----.eeee.............hhhhhhhhhhhhhh.-------hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrv G 178 MFETVPVWRRQPVRVLSLFEDIKKELTSLGFLE-----GQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGS----VRVWSNIPAIRSRHWALVSEEELSLLAQNKQSS-------TKLVKNCFLPLREYFKYFS 379
                                   187       197       207  |    217       227       237       247       257       267       277       287       297       307        |-   |   327       337       347     |   -   |   367       377  
                                                          210   216                                                                                                 316  321                             353     361                  


Chain H from PDB  Type:PROTEIN  Length:267
 aligned with DNM3A_HUMAN | Q9Y6K1 from UniProtKB/Swiss-Prot  Length:912

    Alignment length:283
                                   639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909   
          DNM3A_HUMAN   630 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 912
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----DNA_methylase-2qrvH01 H:630-772                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----DNA_methylase-2qrvH02 H:630-772                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----DNA_methylase-2qrvH03 H:630-772                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----DNA_methylase-2qrvH04 H:630-772                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ....eeeeee....hhhhhhhhhh...eeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhhh....eeee...hhhhh..............hhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhh.....ee.hhh.....eeeeee.................hhhhhh....ee......----------------..ee....ee..hhhhhhhhhh...........hhhhhhhhhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
             SAPs(SNPs) (1) ------------------P--------------------------------------------------DL------------------------------------------------C---------------------Q------G-------------------------------------------------------------------------------------------------------C-------------------S-L-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------------------------------ SAPs(SNPs) (3)
                PROSITE (1) ----SAM_MT_C5  PDB: H:630-908 UniProt: 634-912                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------C5_MTASE_1   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.20a       ------------------------------------------------Exon 1.22  PDB: H:691-721      -------------------------------------------------Exon 1.25b  PDB: H:771-799   -----------------------Exon 1.27b  PDB: H:823-862 (gaps)       ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.21c  PDB: H:642-690 UniProt: 646-694      ------------------------------Exon 1.23  PDB: H:721-770 UniProt: 725-774        ----------------------------Exon 1.26b              ---------------------------------------Exon 1.28c  PDB: H:862-908 UniProt: 866-912     Transcript 1 (2)
                 2qrv H 626 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVR----------------FPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 908
                                   635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825 |       -       845       855       865       875       885       895       905   
                                                                                                                                                                                                                                   827              844
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QRV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QRV)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (61, 67)

Asymmetric Unit(hide GO term definitions)
Chain A,D,E,H   (DNM3A_HUMAN | Q9Y6K1)
molecular function
    GO:0003886    DNA (cytosine-5-)-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine.
    GO:0051718    DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates    Catalysis of the reaction: S-adenosyl-L-methionine + CpG (in DNA) = S-adenosyl-L-homocysteine + 5-MeCpG (in DNA).
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0009008    DNA-methyltransferase activity    Catalysis of the transfer of a methyl group to a DNA molecule.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0045322    unmethylated CpG binding    Interacting selectively and non-covalently with unmethylated CpG motifs. Unmethylated CpG dinucleotides are often associated with gene promoters.
biological process
    GO:0090116    C-5 methylation of cytosine    The covalent transfer of a methyl group to C-5 of cytosine in a DNA molecule.
    GO:0006306    DNA methylation    The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
    GO:0043045    DNA methylation involved in embryo development    The covalent transfer of a methyl group to C-5 of cytosine that contributes to the epigenetic regulation of embryonic gene expression.
    GO:0043046    DNA methylation involved in gamete generation    The covalent transfer of a methyl group to C-5 of cytosine that contributes to the establishment of DNA methylation patterns in the gamete.
    GO:0032776    DNA methylation on cytosine    The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule.
    GO:0010424    DNA methylation on cytosine within a CG sequence    The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule.
    GO:0046498    S-adenosylhomocysteine metabolic process    The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine.
    GO:0046499    S-adenosylmethioninamine metabolic process    The chemical reactions and pathways involving S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt.
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0071230    cellular response to amino acid stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups.
    GO:0071361    cellular response to ethanol    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0071456    cellular response to hypoxia    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0097284    hepatocyte apoptotic process    Any apoptotic process in a hepatocyte, the main structural component of the liver.
    GO:0044027    hypermethylation of CpG island    An increase in the epigenetic methylation of cytosine and adenosine residues in a CpG island in DNA. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0006346    methylation-dependent chromatin silencing    Repression of transcription by methylation of DNA, leading to the formation of heterochromatin.
    GO:0000278    mitotic cell cycle    Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
    GO:0045814    negative regulation of gene expression, epigenetic    Any epigenetic process that stops, prevents or reduces the rate of gene expression.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030182    neuron differentiation    The process in which a relatively unspecialized cell acquires specialized features of a neuron.
    GO:0010942    positive regulation of cell death    Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006349    regulation of gene expression by genetic imprinting    Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself.
    GO:0036276    response to antidepressant    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antidepressant stimulus, a mood-stimulating drug.
    GO:0042220    response to cocaine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0010212    response to ionizing radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
    GO:0010288    response to lead ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.
    GO:0031667    response to nutrient levels    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0009636    response to toxic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
    GO:0033189    response to vitamin A    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
cellular component
    GO:0001741    XY body    A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery.
    GO:0000775    chromosome, centromeric region    The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000791    euchromatin    A dispersed and relatively uncompacted form of chromatin.
    GO:0000792    heterochromatin    A compact and highly condensed form of chromatin.
    GO:0005720    nuclear heterochromatin    A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,C,F,G   (DNM3L_HUMAN | Q9UJW3)
molecular function
    GO:0008047    enzyme activator activity    Binds to and increases the activity of an enzyme.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0030234    enzyme regulator activity    Binds to and modulates the activity of an enzyme.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006306    DNA methylation    The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0043085    positive regulation of catalytic activity    Any process that activates or increases the activity of an enzyme.
    GO:0050790    regulation of catalytic activity    Any process that modulates the activity of an enzyme.
    GO:0006349    regulation of gene expression by genetic imprinting    Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  2qrv
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  DNM3A_HUMAN | Q9Y6K1
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  DNM3L_HUMAN | Q9UJW3
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  2.1.1.37
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  615879
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  DNM3A_HUMAN | Q9Y6K1
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  DNM3L_HUMAN | Q9UJW3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNM3A_HUMAN | Q9Y6K1: 3a1a 3a1b 3llr 3svm 4qbq 4qbr 4qbs 4u7p 4u7t
        DNM3L_HUMAN | Q9UJW3: 2pv0 2pvc 4u7p 4u7t

(-) Related Entries Specified in the PDB File

2pv0 DNMT3L
2pvc DNMT3L-HISTONE H3 TAIL