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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF DNMT3A-DNMT3L C-TERMINAL DOMAIN COMPLEX
Keywords DNA METHYLTRANSFERASE 3A (DNMT3A) AND ITS REGULATORY FACTOR, DNA METHYLTRANSFERASE 3-LIKE PROTEIN (DNMT3L), NUCLEUS, S- ADENOSYL-L-METHIONINE, TRANSFERASE/TRANSFERASE REGULATOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2QRV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  A 272 2143 0
2  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE  B 186 1515 0
3  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE  C 186 1515 0
4  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  D 267 2111 0
5  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  E 270 2128 0
6  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE  F 186 1515 0
7  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE  G 186 1515 0
8  Protein   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  H 267 2111 0
9  Ligand   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  A 1 0 26
10  Ligand   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  D 1 0 26
11  Ligand   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  E 1 0 26
12  Ligand   DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A  H 1 0 26
total       1824 14553 104
Proteins
Unit 1 PRO623 ALA624 GLU625 LYS626 ARG627 LYS628 PRO629 ILE630 ARG631 VAL632 LEU633 SER634 LEU635 PHE636 ASP637 GLY638 ILE639 ALA640 THR641 GLY642 LEU643 LEU644 VAL645 LEU646 LYS647 ASP648 LEU649 GLY650 ILE651 GLN652 VAL653 ASP654 ARG655 TYR656 ILE657 ALA658 SER659 GLU660 VAL661 CYS662 GLU663 ASP664 SER665 ILE666 THR667 VAL668 GLY669 MET670 VAL671 ARG672 HIS673 GLN674 GLY675 LYS676 ILE677 MET678 TYR679 VAL680 GLY681 ASP682 VAL683 ARG684 SER685 VAL686 THR687 GLN688 LYS689 HIS690 ILE691 GLN692 GLU693 TRP694 GLY695 PRO696 PHE697 ASP698 LEU699 VAL700 ILE701 GLY702 GLY703 SER704 PRO705 CYS706 ASN707 ASP708 LEU709 SER710 ILE711 VAL712 ASN713 PRO714 ALA715 ARG716 LYS717 GLY718 LEU719 TYR720 GLU721 GLY722 THR723 GLY724 ARG725 LEU726 PHE727 PHE728 GLU729 PHE730 TYR731 ARG732 LEU733 LEU734 HIS735 ASP736 ALA737 ARG738 PRO739 LYS740 GLU741 GLY742 ASP743 ASP744 ARG745 PRO746 PHE747 PHE748 TRP749 LEU750 PHE751 GLU752 ASN753 VAL754 VAL755 ALA756 MET757 GLY758 VAL759 SER760 ASP761 LYS762 ARG763 ASP764 ILE765 SER766 ARG767 PHE768 LEU769 GLU770 SER771 ASN772 PRO773 VAL774 MET775 ILE776 ASP777 ALA778 LYS779 GLU780 VAL781 SER782 ALA783 ALA784 HIS785 ARG786 ALA787 ARG788 TYR789 PHE790 TRP791 GLY792 ASN793 LEU794 PRO795 GLY796 MET797 ASN798 ARG799 PRO800 LEU801 ALA802 SER803 THR804 VAL805 ASN806 ASP807 LYS808 LEU809 GLU810 LEU811 GLN812 GLU813 CYS814 LEU815 GLU816 HIS817 GLY818 ARG819 ILE820 ALA821 LYS822 PHE823 SER824 LYS825 VAL826 ARG827 GLN842 HIS843 PHE844 PRO845 VAL846 PHE847 MET848 ASN849 GLU850 LYS851 GLU852 ASP853 ILE854 LEU855 TRP856 CYS857 THR858 GLU859 MET860 GLU861 ARG862 VAL863 PHE864 GLY865 PHE866 PRO867 VAL868 HIS869 TYR870 THR871 ASP872 VAL873 SER874 ASN875 MET876 SER877 ARG878 LEU879 ALA880 ARG881 GLN882 ARG883 LEU884 LEU885 GLY886 ARG887 SER888 TRP889 SER890 VAL891 PRO892 VAL893 ILE894 ARG895 HIS896 LEU897 PHE898 ALA899 PRO900 LEU901 LYS902 GLU903 TYR904 PHE905 ALA906 CYS907 VAL908
Unit 2 MET178 PHE179 GLU180 THR181 VAL182 PRO183 VAL184 TRP185 ARG186 ARG187 GLN188 PRO189 VAL190 ARG191 VAL192 LEU193 SER194 LEU195 PHE196 GLU197 ASP198 ILE199 LYS200 LYS201 GLU202 LEU203 THR204 SER205 LEU206 GLY207 PHE208 LEU209 GLU210 GLY216 GLN217 LEU218 LYS219 HIS220 VAL221 VAL222 ASP223 VAL224 THR225 ASP226 THR227 VAL228 ARG229 LYS230 ASP231 VAL232 GLU233 GLU234 TRP235 GLY236 PRO237 PHE238 ASP239 LEU240 VAL241 TYR242 GLY243 ALA244 THR245 PRO246 PRO247 LEU248 GLY249 HIS250 THR251 CYS252 ASP253 ARG254 PRO255 PRO256 SER257 TRP258 TYR259 LEU260 PHE261 GLN262 PHE263 HIS264 ARG265 LEU266 LEU267 GLN268 TYR269 ALA270 ARG271 PRO272 LYS273 PRO274 GLY275 SER276 PRO277 ARG278 PRO279 PHE280 PHE281 TRP282 MET283 PHE284 VAL285 ASP286 ASN287 LEU288 VAL289 LEU290 ASN291 LYS292 GLU293 ASP294 LEU295 ASP296 VAL297 ALA298 SER299 ARG300 PHE301 LEU302 GLU303 MET304 GLU305 PRO306 VAL307 THR308 ILE309 PRO310 ASP311 VAL312 HIS313 GLY314 GLY315 SER316 VAL321 ARG322 VAL323 TRP324 SER325 ASN326 ILE327 PRO328 ALA329 ILE330 ARG331 SER332 ARG333 HIS334 TRP335 ALA336 LEU337 VAL338 SER339 GLU340 GLU341 GLU342 LEU343 SER344 LEU345 LEU346 ALA347 GLN348 ASN349 LYS350 GLN351 SER352 SER353 THR361 LYS362 LEU363 VAL364 LYS365 ASN366 CYS367 PHE368 LEU369 PRO370 LEU371 ARG372 GLU373 TYR374 PHE375 LYS376 TYR377 PHE378 SER379
Unit 3 MET178 PHE179 GLU180 THR181 VAL182 PRO183 VAL184 TRP185 ARG186 ARG187 GLN188 PRO189 VAL190 ARG191 VAL192 LEU193 SER194 LEU195 PHE196 GLU197 ASP198 ILE199 LYS200 LYS201 GLU202 LEU203 THR204 SER205 LEU206 GLY207 PHE208 LEU209 GLU210 GLY216 GLN217 LEU218 LYS219 HIS220 VAL221 VAL222 ASP223 VAL224 THR225 ASP226 THR227 VAL228 ARG229 LYS230 ASP231 VAL232 GLU233 GLU234 TRP235 GLY236 PRO237 PHE238 ASP239 LEU240 VAL241 TYR242 GLY243 ALA244 THR245 PRO246 PRO247 LEU248 GLY249 HIS250 THR251 CYS252 ASP253 ARG254 PRO255 PRO256 SER257 TRP258 TYR259 LEU260 PHE261 GLN262 PHE263 HIS264 ARG265 LEU266 LEU267 GLN268 TYR269 ALA270 ARG271 PRO272 LYS273 PRO274 GLY275 SER276 PRO277 ARG278 PRO279 PHE280 PHE281 TRP282 MET283 PHE284 VAL285 ASP286 ASN287 LEU288 VAL289 LEU290 ASN291 LYS292 GLU293 ASP294 LEU295 ASP296 VAL297 ALA298 SER299 ARG300 PHE301 LEU302 GLU303 MET304 GLU305 PRO306 VAL307 THR308 ILE309 PRO310 ASP311 VAL312 HIS313 GLY314 GLY315 SER316 VAL321 ARG322 VAL323 TRP324 SER325 ASN326 ILE327 PRO328 ALA329 ILE330 ARG331 SER332 ARG333 HIS334 TRP335 ALA336 LEU337 VAL338 SER339 GLU340 GLU341 GLU342 LEU343 SER344 LEU345 LEU346 ALA347 GLN348 ASN349 LYS350 GLN351 SER352 SER353 THR361 LYS362 LEU363 VAL364 LYS365 ASN366 CYS367 PHE368 LEU369 PRO370 LEU371 ARG372 GLU373 TYR374 PHE375 LYS376 TYR377 PHE378 SER379
Unit 4 LYS626 ARG627 LYS628 PRO629 ILE630 ARG631 VAL632 LEU633 SER634 LEU635 PHE636 ASP637 GLY638 ILE639 ALA640 THR641 GLY642 LEU643 LEU644 VAL645 LEU646 LYS647 ASP648 LEU649 GLY650 ILE651 GLN652 VAL653 ASP654 ARG655 TYR656 ILE657 ALA658 SER659 GLU660 VAL661 CYS662 GLU663 ASP664 SER665 ILE666 THR667 VAL668 GLY669 MET670 VAL671 ARG672 HIS673 GLN674 GLY675 LYS676 ILE677 MET678 TYR679 VAL680 GLY681 ASP682 VAL683 ARG684 SER685 VAL686 THR687 GLN688 LYS689 HIS690 ILE691 GLN692 GLU693 TRP694 GLY695 PRO696 PHE697 ASP698 LEU699 VAL700 ILE701 GLY702 GLY703 SER704 PRO705 CYS706 ASN707 ASP708 LEU709 SER710 ILE711 VAL712 ASN713 PRO714 ALA715 ARG716 LYS717 GLY718 LEU719 TYR720 GLU721 GLY722 THR723 GLY724 ARG725 LEU726 PHE727 PHE728 GLU729 PHE730 TYR731 ARG732 LEU733 LEU734 HIS735 ASP736 ALA737 ARG738 PRO739 LYS740 GLU741 GLY742 ASP743 ASP744 ARG745 PRO746 PHE747 PHE748 TRP749 LEU750 PHE751 GLU752 ASN753 VAL754 VAL755 ALA756 MET757 GLY758 VAL759 SER760 ASP761 LYS762 ARG763 ASP764 ILE765 SER766 ARG767 PHE768 LEU769 GLU770 SER771 ASN772 PRO773 VAL774 MET775 ILE776 ASP777 ALA778 LYS779 GLU780 VAL781 SER782 ALA783 ALA784 HIS785 ARG786 ALA787 ARG788 TYR789 PHE790 TRP791 GLY792 ASN793 LEU794 PRO795 GLY796 MET797 ASN798 ARG799 PRO800 LEU801 ALA802 SER803 THR804 VAL805 ASN806 ASP807 LYS808 LEU809 GLU810 LEU811 GLN812 GLU813 CYS814 LEU815 GLU816 HIS817 GLY818 ARG819 ILE820 ALA821 LYS822 PHE823 SER824 LYS825 VAL826 ARG827 PHE844 PRO845 VAL846 PHE847 MET848 ASN849 GLU850 LYS851 GLU852 ASP853 ILE854 LEU855 TRP856 CYS857 THR858 GLU859 MET860 GLU861 ARG862 VAL863 PHE864 GLY865 PHE866 PRO867 VAL868 HIS869 TYR870 THR871 ASP872 VAL873 SER874 ASN875 MET876 SER877 ARG878 LEU879 ALA880 ARG881 GLN882 ARG883 LEU884 LEU885 GLY886 ARG887 SER888 TRP889 SER890 VAL891 PRO892 VAL893 ILE894 ARG895 HIS896 LEU897 PHE898 ALA899 PRO900 LEU901 LYS902 GLU903 TYR904 PHE905 ALA906 CYS907 VAL908
Unit 5 PRO623 ALA624 GLU625 LYS626 ARG627 LYS628 PRO629 ILE630 ARG631 VAL632 LEU633 SER634 LEU635 PHE636 ASP637 GLY638 ILE639 ALA640 THR641 GLY642 LEU643 LEU644 VAL645 LEU646 LYS647 ASP648 LEU649 GLY650 ILE651 GLN652 VAL653 ASP654 ARG655 TYR656 ILE657 ALA658 SER659 GLU660 VAL661 CYS662 GLU663 ASP664 SER665 ILE666 THR667 VAL668 GLY669 MET670 VAL671 ARG672 HIS673 GLN674 GLY675 LYS676 ILE677 MET678 TYR679 VAL680 GLY681 ASP682 VAL683 ARG684 SER685 VAL686 THR687 GLN688 LYS689 HIS690 ILE691 GLN692 GLU693 TRP694 GLY695 PRO696 PHE697 ASP698 LEU699 VAL700 ILE701 GLY702 GLY703 SER704 PRO705 CYS706 ASN707 ASP708 LEU709 SER710 ILE711 VAL712 ASN713 PRO714 ALA715 ARG716 LYS717 GLY718 LEU719 TYR720 GLU721 GLY722 THR723 GLY724 ARG725 LEU726 PHE727 PHE728 GLU729 PHE730 TYR731 ARG732 LEU733 LEU734 HIS735 ASP736 ALA737 ARG738 PRO739 LYS740 GLU741 GLY742 ASP743 ASP744 ARG745 PRO746 PHE747 PHE748 TRP749 LEU750 PHE751 GLU752 ASN753 VAL754 VAL755 ALA756 MET757 GLY758 VAL759 SER760 ASP761 LYS762 ARG763 ASP764 ILE765 SER766 ARG767 PHE768 LEU769 GLU770 SER771 ASN772 PRO773 VAL774 MET775 ILE776 ASP777 ALA778 LYS779 GLU780 VAL781 SER782 ALA783 ALA784 HIS785 ARG786 ALA787 ARG788 TYR789 PHE790 TRP791 GLY792 ASN793 LEU794 PRO795 GLY796 MET797 ASN798 ARG799 PRO800 LEU801 ALA802 SER803 THR804 VAL805 ASN806 ASP807 LYS808 LEU809 GLU810 LEU811 GLN812 GLU813 CYS814 LEU815 GLU816 HIS817 GLY818 ARG819 ILE820 ALA821 LYS822 PHE823 SER824 LYS825 VAL826 ARG827 PHE844 PRO845 VAL846 PHE847 MET848 ASN849 GLU850 LYS851 GLU852 ASP853 ILE854 LEU855 TRP856 CYS857 THR858 GLU859 MET860 GLU861 ARG862 VAL863 PHE864 GLY865 PHE866 PRO867 VAL868 HIS869 TYR870 THR871 ASP872 VAL873 SER874 ASN875 MET876 SER877 ARG878 LEU879 ALA880 ARG881 GLN882 ARG883 LEU884 LEU885 GLY886 ARG887 SER888 TRP889 SER890 VAL891 PRO892 VAL893 ILE894 ARG895 HIS896 LEU897 PHE898 ALA899 PRO900 LEU901 LYS902 GLU903 TYR904 PHE905 ALA906 CYS907 VAL908
Unit 6 MET178 PHE179 GLU180 THR181 VAL182 PRO183 VAL184 TRP185 ARG186 ARG187 GLN188 PRO189 VAL190 ARG191 VAL192 LEU193 SER194 LEU195 PHE196 GLU197 ASP198 ILE199 LYS200 LYS201 GLU202 LEU203 THR204 SER205 LEU206 GLY207 PHE208 LEU209 GLU210 GLY216 GLN217 LEU218 LYS219 HIS220 VAL221 VAL222 ASP223 VAL224 THR225 ASP226 THR227 VAL228 ARG229 LYS230 ASP231 VAL232 GLU233 GLU234 TRP235 GLY236 PRO237 PHE238 ASP239 LEU240 VAL241 TYR242 GLY243 ALA244 THR245 PRO246 PRO247 LEU248 GLY249 HIS250 THR251 CYS252 ASP253 ARG254 PRO255 PRO256 SER257 TRP258 TYR259 LEU260 PHE261 GLN262 PHE263 HIS264 ARG265 LEU266 LEU267 GLN268 TYR269 ALA270 ARG271 PRO272 LYS273 PRO274 GLY275 SER276 PRO277 ARG278 PRO279 PHE280 PHE281 TRP282 MET283 PHE284 VAL285 ASP286 ASN287 LEU288 VAL289 LEU290 ASN291 LYS292 GLU293 ASP294 LEU295 ASP296 VAL297 ALA298 SER299 ARG300 PHE301 LEU302 GLU303 MET304 GLU305 PRO306 VAL307 THR308 ILE309 PRO310 ASP311 VAL312 HIS313 GLY314 GLY315 SER316 VAL321 ARG322 VAL323 TRP324 SER325 ASN326 ILE327 PRO328 ALA329 ILE330 ARG331 SER332 ARG333 HIS334 TRP335 ALA336 LEU337 VAL338 SER339 GLU340 GLU341 GLU342 LEU343 SER344 LEU345 LEU346 ALA347 GLN348 ASN349 LYS350 GLN351 SER352 SER353 THR361 LYS362 LEU363 VAL364 LYS365 ASN366 CYS367 PHE368 LEU369 PRO370 LEU371 ARG372 GLU373 TYR374 PHE375 LYS376 TYR377 PHE378 SER379
Unit 7 MET178 PHE179 GLU180 THR181 VAL182 PRO183 VAL184 TRP185 ARG186 ARG187 GLN188 PRO189 VAL190 ARG191 VAL192 LEU193 SER194 LEU195 PHE196 GLU197 ASP198 ILE199 LYS200 LYS201 GLU202 LEU203 THR204 SER205 LEU206 GLY207 PHE208 LEU209 GLU210 GLY216 GLN217 LEU218 LYS219 HIS220 VAL221 VAL222 ASP223 VAL224 THR225 ASP226 THR227 VAL228 ARG229 LYS230 ASP231 VAL232 GLU233 GLU234 TRP235 GLY236 PRO237 PHE238 ASP239 LEU240 VAL241 TYR242 GLY243 ALA244 THR245 PRO246 PRO247 LEU248 GLY249 HIS250 THR251 CYS252 ASP253 ARG254 PRO255 PRO256 SER257 TRP258 TYR259 LEU260 PHE261 GLN262 PHE263 HIS264 ARG265 LEU266 LEU267 GLN268 TYR269 ALA270 ARG271 PRO272 LYS273 PRO274 GLY275 SER276 PRO277 ARG278 PRO279 PHE280 PHE281 TRP282 MET283 PHE284 VAL285 ASP286 ASN287 LEU288 VAL289 LEU290 ASN291 LYS292 GLU293 ASP294 LEU295 ASP296 VAL297 ALA298 SER299 ARG300 PHE301 LEU302 GLU303 MET304 GLU305 PRO306 VAL307 THR308 ILE309 PRO310 ASP311 VAL312 HIS313 GLY314 GLY315 SER316 VAL321 ARG322 VAL323 TRP324 SER325 ASN326 ILE327 PRO328 ALA329 ILE330 ARG331 SER332 ARG333 HIS334 TRP335 ALA336 LEU337 VAL338 SER339 GLU340 GLU341 GLU342 LEU343 SER344 LEU345 LEU346 ALA347 GLN348 ASN349 LYS350 GLN351 SER352 SER353 THR361 LYS362 LEU363 VAL364 LYS365 ASN366 CYS367 PHE368 LEU369 PRO370 LEU371 ARG372 GLU373 TYR374 PHE375 LYS376 TYR377 PHE378 SER379
Unit 8 LYS626 ARG627 LYS628 PRO629 ILE630 ARG631 VAL632 LEU633 SER634 LEU635 PHE636 ASP637 GLY638 ILE639 ALA640 THR641 GLY642 LEU643 LEU644 VAL645 LEU646 LYS647 ASP648 LEU649 GLY650 ILE651 GLN652 VAL653 ASP654 ARG655 TYR656 ILE657 ALA658 SER659 GLU660 VAL661 CYS662 GLU663 ASP664 SER665 ILE666 THR667 VAL668 GLY669 MET670 VAL671 ARG672 HIS673 GLN674 GLY675 LYS676 ILE677 MET678 TYR679 VAL680 GLY681 ASP682 VAL683 ARG684 SER685 VAL686 THR687 GLN688 LYS689 HIS690 ILE691 GLN692 GLU693 TRP694 GLY695 PRO696 PHE697 ASP698 LEU699 VAL700 ILE701 GLY702 GLY703 SER704 PRO705 CYS706 ASN707 ASP708 LEU709 SER710 ILE711 VAL712 ASN713 PRO714 ALA715 ARG716 LYS717 GLY718 LEU719 TYR720 GLU721 GLY722 THR723 GLY724 ARG725 LEU726 PHE727 PHE728 GLU729 PHE730 TYR731 ARG732 LEU733 LEU734 HIS735 ASP736 ALA737 ARG738 PRO739 LYS740 GLU741 GLY742 ASP743 ASP744 ARG745 PRO746 PHE747 PHE748 TRP749 LEU750 PHE751 GLU752 ASN753 VAL754 VAL755 ALA756 MET757 GLY758 VAL759 SER760 ASP761 LYS762 ARG763 ASP764 ILE765 SER766 ARG767 PHE768 LEU769 GLU770 SER771 ASN772 PRO773 VAL774 MET775 ILE776 ASP777 ALA778 LYS779 GLU780 VAL781 SER782 ALA783 ALA784 HIS785 ARG786 ALA787 ARG788 TYR789 PHE790 TRP791 GLY792 ASN793 LEU794 PRO795 GLY796 MET797 ASN798 ARG799 PRO800 LEU801 ALA802 SER803 THR804 VAL805 ASN806 ASP807 LYS808 LEU809 GLU810 LEU811 GLN812 GLU813 CYS814 LEU815 GLU816 HIS817 GLY818 ARG819 ILE820 ALA821 LYS822 PHE823 SER824 LYS825 VAL826 ARG827 PHE844 PRO845 VAL846 PHE847 MET848 ASN849 GLU850 LYS851 GLU852 ASP853 ILE854 LEU855 TRP856 CYS857 THR858 GLU859 MET860 GLU861 ARG862 VAL863 PHE864 GLY865 PHE866 PRO867 VAL868 HIS869 TYR870 THR871 ASP872 VAL873 SER874 ASN875 MET876 SER877 ARG878 LEU879 ALA880 ARG881 GLN882 ARG883 LEU884 LEU885 GLY886 ARG887 SER888 TRP889 SER890 VAL891 PRO892 VAL893 ILE894 ARG895 HIS896 LEU897 PHE898 ALA899 PRO900 LEU901 LYS902 GLU903 TYR904 PHE905 ALA906 CYS907 VAL908
Ligands
Unit 9 SAH1
Unit 10 SAH4
Unit 11 SAH5
Unit 12 SAH8
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany