Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  SALL WITH CLDA AND LMET
 
Authors :  J. P. Noel, F. Pojer
Date :  05 Jun 07  (Deposition) - 11 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  A  (6x)
Keywords :  Chlorinase, Clda And L-Met Complex, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Eustaquio, F. Pojer, J. P. Noel, B. S. Moore
Discovery And Characterization Of A Marine Bacterial Sam-Dependent Chlorinase
Nat. Chem. Biol. V. 4 69 2008
PubMed-ID: 18059261  |  Reference-DOI: 10.1038/NCHEMBIO.2007.56

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PHIS8
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SALL
    Organism Scientific: SALINISPORA TROPICA
    Organism Taxid: 369723
    Strain: CNB-440

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A
Biological Unit 2 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
15CD1Ligand/Ion5'-CHLORO-5'-DEOXYADENOSINE
2MET1Mod. Amino AcidMETHIONINE
3PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
15CD3Ligand/Ion5'-CHLORO-5'-DEOXYADENOSINE
2MET3Mod. Amino AcidMETHIONINE
3PEG9Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 30)
No.NameCountTypeFull Name
15CD6Ligand/Ion5'-CHLORO-5'-DEOXYADENOSINE
2MET6Mod. Amino AcidMETHIONINE
3PEG18Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:11 , PHE A:45 , TYR A:70 , TYR A:72 , PRO A:73 , THR A:75 , TRP A:129 , TYR A:130 , GLY A:131 , PHE A:186 , ASN A:188 , PHE A:228 , LEU A:250 , GLN A:252 , MET A:600BINDING SITE FOR RESIDUE 5CD A 500
2AC2SOFTWAREALA A:18 , THR A:128 , TRP A:129 , ASP A:183 , ASN A:188 , TRP A:190 , SER A:242 , 5CD A:500BINDING SITE FOR RESIDUE MET A 600
3AC3SOFTWAREMET A:1 , GLN A:2 , PRO A:62 , ALA A:63 , HIS A:64 , GLY A:145BINDING SITE FOR RESIDUE PEG A 601
4AC4SOFTWAREMET A:1 , HIS A:3 , ARG A:85 , GLY A:89 , LEU A:91 , LEU A:142 , THR A:146BINDING SITE FOR RESIDUE PEG A 602
5AC5SOFTWAREHIS A:59 , LYS A:88 , ALA A:106BINDING SITE FOR RESIDUE PEG A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q6I)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:123 -Pro A:124
2Gly A:173 -Gly A:174
3Ala A:214 -Leu A:215
4Leu A:215 -Ser A:216

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q6I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q6I)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q6I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
 aligned with SALL_SALTO | A4X3Q0 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270   
           SALL_SALTO     1 MQHNLIAFLSDVGSADEAHALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLADVPHSFPAHTVICAYVYPETGTATHTIAVRNEKGQLLVGPNNGLLSFALDASPAVECHEVLSPDVMNQPVTPTWYGKDIVAACAAHLAAGTDLAAVGPRIDPKQIVRLPYASASEVEGGIRGEVVRIDRAFGNVWTNIPTHLIGSMLQDGERLEVKIEALSDTVLELPFCKTFGEVDEGQPLLYLNSRGRLALGLNQSNFIEKWPVVPGDSITVSPRV 273
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh...eeeeee..........eeeeee....eeeee....hhhhhhhh.eeeeeee.hhhhh.......hhhhhhhhhhhhhhhhh.hhhhh....hhhhh........ee....eeeeeeee......eeeeeehhhhh..-----.eeeee.....eeeee....hhhhh....eeeee....eeeeee...hhhhhh......eeeee.-. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q6i A   1 MQHNLIAFLSDVGSADEAHALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLADVPHSFPAHTVICAYVYPETGTATHTIAVRNEKGQLLVGPNNGLLSFALDASPAVECHEVLSPDVMNQPVTPTWYGKDIVAACAAHLAAGTDLAAVGPRIDPKQIVRLPYASASEVEGGIRGEVVRIDRAFGNVWTNIPTHLIGSM-----RLEVKIEALSDTVLELPFCKTFGEVDEGQPLLYLNSRGRLALGLNQSNFIEKWPVVPGDSITVSP-M 600
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200|     |210       220       230       240       250       260       270| |
                                                                                                                                                                                                                                  201   207                                                             271 |
                                                                                                                                                                                                                                                                                                          600
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Q6I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Q6I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Q6I)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (SALL_SALTO | A4X3Q0)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016765    transferase activity, transferring alkyl or aryl (other than methyl) groups    Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    5CD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MET  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:214 - Leu A:215   [ RasMol ]  
    Gln A:123 - Pro A:124   [ RasMol ]  
    Gly A:173 - Gly A:174   [ RasMol ]  
    Leu A:215 - Ser A:216   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2q6i
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  SALL_SALTO | A4X3Q0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  SALL_SALTO | A4X3Q0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SALL_SALTO | A4X3Q0: 2q6k 2q6l 2q6o

(-) Related Entries Specified in the PDB File

2q6k THE SAME PROTEIN COMPLEXED WITH ADENOSINE
2q6l SALLY70T/G131S WITH CLDA AND L-MET
2q6o SALLY70T WITH SAM AND CL